Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E22
         (732 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071048-1|AAL48670.1|  142|Drosophila melanogaster RE13747p pro...   255   5e-68
AE014134-734|AAF51017.2|  142|Drosophila melanogaster CG3058-PA ...   255   5e-68
L27072-1|AAA28937.1|  107|Drosophila melanogaster thioredoxin-li...    40   0.005
AE014298-719|AAF46019.1|  107|Drosophila melanogaster CG4193-PA ...    40   0.005
AF313480-1|AAG29546.1| 2797|Drosophila melanogaster gamma dynein...    30   3.7  

>AY071048-1|AAL48670.1|  142|Drosophila melanogaster RE13747p
           protein.
          Length = 142

 Score =  255 bits (624), Expect = 5e-68
 Identities = 113/124 (91%), Positives = 120/124 (96%)
 Frame = +3

Query: 216 VNSDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP 395
           ++ +++  VIRFGHDWDP CMKMDEV+YSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP
Sbjct: 19  LSEEDRVVVIRFGHDWDPACMKMDEVMYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP 78

Query: 396 CTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYST 575
           CTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDI+ETVYRGARKGRGLVVSPKDYST
Sbjct: 79  CTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKDYST 138

Query: 576 KYRY 587
           KYRY
Sbjct: 139 KYRY 142


>AE014134-734|AAF51017.2|  142|Drosophila melanogaster CG3058-PA
           protein.
          Length = 142

 Score =  255 bits (624), Expect = 5e-68
 Identities = 113/124 (91%), Positives = 120/124 (96%)
 Frame = +3

Query: 216 VNSDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP 395
           ++ +++  VIRFGHDWDP CMKMDEV+YSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP
Sbjct: 19  LSEEDRVVVIRFGHDWDPACMKMDEVMYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP 78

Query: 396 CTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYST 575
           CTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDI+ETVYRGARKGRGLVVSPKDYST
Sbjct: 79  CTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKDYST 138

Query: 576 KYRY 587
           KYRY
Sbjct: 139 KYRY 142


>L27072-1|AAA28937.1|  107|Drosophila melanogaster thioredoxin-like
           protein protein.
          Length = 107

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 19/83 (22%), Positives = 40/83 (48%)
 Frame = +3

Query: 222 SDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCT 401
           +D+K  V+ F   W   C +M+  + S+A K  + AV+  +D+ +  +  + Y++    T
Sbjct: 17  ADDKLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPT 76

Query: 402 VMFFFRNKHIMIDLGTGNNNKIN 470
            +F  +N+ +    G   +   N
Sbjct: 77  FVFLRQNRRLASFAGADEHKLTN 99


>AE014298-719|AAF46019.1|  107|Drosophila melanogaster CG4193-PA
           protein.
          Length = 107

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 19/83 (22%), Positives = 40/83 (48%)
 Frame = +3

Query: 222 SDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCT 401
           +D+K  V+ F   W   C +M+  + S+A K  + AV+  +D+ +  +  + Y++    T
Sbjct: 17  ADDKLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPT 76

Query: 402 VMFFFRNKHIMIDLGTGNNNKIN 470
            +F  +N+ +    G   +   N
Sbjct: 77  FVFLRQNRRLASFAGADEHKLTN 99


>AF313480-1|AAG29546.1| 2797|Drosophila melanogaster gamma dynein
           protein.
          Length = 2797

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 230 LVTVHVFYRSVFKKLCLLRLTSDFRVV*SRRCLFCY-FITKRMFCEIENFKFXXXX*YVG 54
           +VT+HV  R +F  LC LR+ S       ++  F Y      +   I +  F     Y+G
Sbjct: 288 MVTIHVHQRDIFDDLCTLRIKSAGDFEWQKQARFYYNEDNDDVIVGITDVNFVYQNEYLG 347

Query: 53  IT 48
           +T
Sbjct: 348 VT 349


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,770,615
Number of Sequences: 53049
Number of extensions: 605716
Number of successful extensions: 1163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)