Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E22
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    29   2.6  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     29   2.6  
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    29   2.6  
U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine rece...    29   4.5  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   7.8  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    28   7.8  

>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 587 ISVFGRVIFR*DNKTSSFSCPSVHSF--NNINHLLLVFERPVDFIVVASP 444
           +S  GR+ +  DN TS F C    +F   N+NH  LV  R +D I+V  P
Sbjct: 288 VSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNHYPLVL-RWIDNIMVTMP 336


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTK 578
           GT   N +NW  ++K  + D + +V + ++K   LV   +DY+T+
Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTK 578
           GT   N +NW  ++K  + D + +V + ++K   LV   +DY+T+
Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTK 578
           GT   N +NW  ++K  + D + +V + ++K   LV   +DY+T+
Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 382 SYILLKSGTSVMSTKYMTAKFFTFSAMLYNTSSIFIHVGSQSCPNLITFCFSSLFTFSIE 203
           +Y LLK+  +  S K   A FF  +   Y       +V + S PN   FC    F ++I 
Sbjct: 482 NYTLLKTTKATYSQKMFMAIFFAITEAYYIG---LCYVDTSSLPN---FCVMIAFDYAIP 535

Query: 202 VC 197
           VC
Sbjct: 536 VC 537


>U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 25 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/56 (26%), Positives = 32/56 (57%)
 Frame = -3

Query: 439 SIIMCLLRKKNITVHGSYNSYILLKSGTSVMSTKYMTAKFFTFSAMLYNTSSIFIH 272
           + +M L  KK+  +  SY+  I +K+GT ++++   +  FF    ++ + SSI ++
Sbjct: 19  AFMMYLALKKSPKIMRSYSVVITIKTGTDILAS---SMSFFVMQRIITDGSSIVVN 71


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical
           protein T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTK 578
           GT   N +NW  ++K  + D + TV + +++   +V   +DY+T+
Sbjct: 590 GTVRYNCLNWLEKNKDPLNDTVVTVMKASKEHALIVEVWQDYTTQ 634


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical
           protein T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTK 578
           GT   N +NW  ++K  + D + TV + +++   +V   +DY+T+
Sbjct: 590 GTVRYNCLNWLEKNKDPLNDTVVTVMKASKEHALIVEVWQDYTTQ 634


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain
           2 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTK 578
           GT   N +NW  ++K  + D + TV + +++   +V   +DY+T+
Sbjct: 590 GTVRYNCLNWLEKNKDPLNDTVVTVMKASKEHALIVEVWQDYTTQ 634


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,895,362
Number of Sequences: 27780
Number of extensions: 339286
Number of successful extensions: 850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)