Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E21
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 1.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 1.8
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 26 4.1
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 5.4
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom... 25 7.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 7.1
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 9.4
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.4
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 25 9.4
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 242 WFLQSPPSLKPRTLLLSSWMLLTVSPSTL 328
+ L++PPS++PR + + W++ P+ L
Sbjct: 284 FILEAPPSMQPRLIQFTRWVVDKADPNFL 312
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 236 PVWFLQSPPSLKPRTLLLSSWMLLTVSPSTLLRSSLPAPLTSRQKLCLATTTSAS 400
PVW S P P T SS T P+T SS P +S + +A++ SAS
Sbjct: 124 PVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTE---VASSYSAS 175
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 582 KYIKSFLPWVDAKG 541
KY+K FLP+VDA G
Sbjct: 177 KYLKEFLPYVDAIG 190
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 236 PVWFLQSPPSLKPRTLLLSSWMLLTVSPSTLLRSSLPAPLTS 361
P W + S ++ L+ S L+ +PS+L RSS+ + +S
Sbjct: 954 PDWISNTKQSFDKKSSLIDSIPALSPAPSSLARSSVSSQRSS 995
>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 160 SQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVA--ALSQAPHSPAVVL-DAVNGVPLDTP 330
S ++ ++ G+ + +P V A + P++A + + L D +NG+P DTP
Sbjct: 383 SNRASMILSGTSMASPHVAGLAAYFISLDPSLANHPVELKKYMLKFALKDLLNGIPEDTP 442
Query: 331 EVVA 342
V+A
Sbjct: 443 NVLA 446
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 139 VPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVV 294
+P SSLS YS+SV+ S + + +++LI A ++ S P S ++V
Sbjct: 657 IPISSSLSTYSSSVIPSSSTLVSS--SSSLIVSSSPVASSSSSPIPSSSSLV 706
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 412 RQQTACGGGGSQTELLPGSERRGQRRPQE 326
+Q A GG +TE +P + RRG ++ Q+
Sbjct: 175 QQHIAQLGGKKETEKMPMAARRGMKKKQK 203
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 283 PAVV--LDAVNGVPLDTPEVVAARAAHFQAKAL 375
PA++ L+ ++G PL+TP + + H + +A+
Sbjct: 325 PALIEGLNILDGYPLNTPSLAFPKRLHLEVEAM 357
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 9.4
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 130 SAIVPGVSSL--SQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDA 303
+ I PG +++ + STS V + + +V + ++I + + + SQ +
Sbjct: 66 NGITPGTTTIYPTSISTSGVSSNNIDETSVSSESIITSTITTTITSGSQLY---TTTITG 122
Query: 304 VNGVPLDTPEVVAARAAHFQAKALSG 381
N P+DT EVV A F SG
Sbjct: 123 QN-TPVDTVEVVIPTAGTFTTTLTSG 147
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 259 ALSQAPHSPAVVLDAVNGVPLDTPEVVAARAAHFQAKALSGYH 387
A+S HSP+ L + +P TP + +F + +S H
Sbjct: 171 AMSPPSHSPSPFLQSSQHIPPSTPAQKLRKKNNFDSFRISNSH 213
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 532 YPKALSVHPW*KALNIFK 585
YP AL +H W ++ NI K
Sbjct: 208 YPTALQIHNWLRSTNITK 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,377
Number of Sequences: 5004
Number of extensions: 37810
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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