Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E20
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 57 3e-09
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 37 0.003
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 31 0.26
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.4
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 27 2.4
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 7.3
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe... 26 7.3
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 26 7.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.6
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 57.2 bits (132), Expect = 3e-09
Identities = 28/98 (28%), Positives = 54/98 (55%)
Frame = +1
Query: 478 EFAESGEDGATTTFLRELAIKYAMVIVSSILXRDEKHSDILWNTAVVISDTGNVIGKHRK 657
+ AE +G + + LA KY + I+ ++EK S+I++N+ + I++ GN+ G +RK
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRK 118
Query: 658 NHIPXVGDFNESNYYMEGNTGHPVFAXXYGKIAVNICF 771
H+ F+ + + + P+F +GK+ V IC+
Sbjct: 119 VHL-----FDTERKHFKKGSDFPIFETSFGKLGVMICW 151
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 37.1 bits (82), Expect = 0.003
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 5/133 (3%)
Frame = +1
Query: 388 AGQEGVNIICFQXLWNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIKYAMVIVSSI 567
A + G N+I ++N P+ T + E E E + L +A +
Sbjct: 71 AAKNGSNVIVLPEIFNSPYG--TGYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGS 126
Query: 568 LXRDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPXVGDFNESNYYMEGNTGHPVF 732
+ E+ L+NTA+V +G +I HRK H IP F ES+ G+ +
Sbjct: 127 IP--ERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMV 183
Query: 733 AXXYGKIAVNICF 771
YGK + IC+
Sbjct: 184 DTEYGKFGLGICY 196
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 30.7 bits (66), Expect = 0.26
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -1
Query: 518 KVVVAPSSPDSANSHHGCFSLVQNAKGIFHNXWKQMMLTPSWPATSMIFLTLLKIXFFCS 339
++ V S ++A SH CF QN+ + + + +P T F+ LLK FF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 338 LXGR 327
L GR
Sbjct: 290 LFGR 293
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -1
Query: 299 NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 189
++S N++R+G L +G ++VC GD + LSC G+
Sbjct: 885 DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 786 DVVPSEADVHRDLAVXXRKYRMAGVTFHVVV 694
DVVP A R L + Y AG TFH V+
Sbjct: 25 DVVPKTAANFRALCTGEKGYGYAGSTFHRVI 55
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -1
Query: 284 HNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQXAPGQVDC 105
H+S +++ + + D+ +L G+ +FD + + ++E F+ P V+
Sbjct: 977 HSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDP-DVNV 1035
Query: 104 FIIDFKA 84
II KA
Sbjct: 1036 LIISLKA 1042
>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = -1
Query: 602 QSMSECFSSLXNIEDTITIAYLMASSRRKVVVAPSSPD 489
++ ++CF L +E+ I+ ++++ K ++A +PD
Sbjct: 55 RTSNDCFLGLLGVEEDISTYAFYSNTKVKFILAVKAPD 92
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 759 HRDLAVXXRKYRMAGVTFHVVVGFVKIAD 673
HR+L V K A V H VVG K D
Sbjct: 202 HRELTVRAAKQHGARVLIHPVVGMTKPGD 230
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 547 MVIVSSILXRDEKHSDIL 600
+++VS++L DEKH D++
Sbjct: 998 LIVVSNLLEMDEKHVDVV 1015
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,034
Number of Sequences: 5004
Number of extensions: 57993
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -