Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E20
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 221 7e-58
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 60 3e-09
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 46 3e-05
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 46 4e-05
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 36 0.050
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 31 1.1
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.4
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 28 7.6
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 221 bits (539), Expect = 7e-58
Identities = 106/173 (61%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Frame = +1
Query: 304 HSIAVPTDRPXNEQXXXXXXXXXXXXDVAGQEGVNIICFQX-----LWNMPFAFCTREKQ 468
+SIA+PT +Q D AG GVNI+C Q W MPFAFCTREK+
Sbjct: 103 NSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTMPFAFCTREKR 162
Query: 469 PWCEFAESGEDGATTTFLRELAIKYAMVIVSSILXRDEKHSDILWNTAVVISDTGNVIGK 648
WCEFAE DG +T FL++LA KY MVIVS IL RD H +I+WNTAVVI + GN+IG
Sbjct: 163 -WCEFAEP-VDGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGI 220
Query: 649 HRKNHIPXVGDFNESNYYMEGNTGHPVFAXXYGKIAVNICFGRHHVLNWMMFG 807
HRKNHIP VGDFNES YYMEGNTGHPVF YGKI VNIC+GRHH LNW+ FG
Sbjct: 221 HRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFG 273
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 59.7 bits (138), Expect = 3e-09
Identities = 36/128 (28%), Positives = 64/128 (50%)
Frame = +1
Query: 388 AGQEGVNIICFQXLWNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIKYAMVIVSSI 567
A ++G NI+ Q L+ + FC ++ + + A+ + T ++LA + +VI S
Sbjct: 38 AHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEVVIPVSF 96
Query: 568 LXRDEKHSDILWNTAVVISDTGNVIGKHRKNHIPXVGDFNESNYYMEGNTGHPVFAXXYG 747
E+ ++ +N+ +I G +G +RK+HIP + E Y+ G+TG F Y
Sbjct: 97 F---EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYA 153
Query: 748 KIAVNICF 771
I V IC+
Sbjct: 154 TIGVGICW 161
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 46.4 bits (105), Expect = 3e-05
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Frame = +1
Query: 382 DVAGQEGVNIICFQXLWNMPFAFCTREKQP-WCEFAESGEDGATT-TFLRELAIKYAMVI 555
+ A G ++ +WN P++ + P + E E+G D A + + + E+A + +
Sbjct: 71 EAAAAGGAKLVLLPEIWNGPYS---NDSFPEYAEDIEAGGDAAPSFSMMSEVARSLQITL 127
Query: 556 VSSILXRDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPXVGDFNESNYYMEGNTG 720
V + E+ + L+NT V G + GKHRK H IP F ES G
Sbjct: 128 VGGSI--SERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQ-D 184
Query: 721 HPVFAXXYGKIAVNICF 771
V G+I + IC+
Sbjct: 185 LTVVDTDVGRIGIGICY 201
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 46.0 bits (104), Expect = 4e-05
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Frame = +1
Query: 412 ICFQXLWNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIKYAMVIVSSILXRDEKHS 591
+ FQ +WN P++ T E + G + + L E+A + + IV + E+ S
Sbjct: 16 VLFQEIWNCPYSMETLPSHG--EDIDGGAS-PSVSMLSEVAARRRITIVGGSIP--ERSS 70
Query: 592 DILWNTAVVISDTGNVIGKHRKNH---IPXVGD--FNESNYYMEGNTGHPVFAXXYGKIA 756
L+NT VI G + KHRK H I GD F ES+ + G + G+I
Sbjct: 71 GRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDVGRIG 129
Query: 757 VNIC 768
+ IC
Sbjct: 130 IGIC 133
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 35.5 bits (78), Expect = 0.050
Identities = 28/90 (31%), Positives = 42/90 (46%)
Frame = +1
Query: 502 GATTTFLRELAIKYAMVIVSSILXRDEKHSDILWNTAVVISDTGNVIGKHRKNHIPXVGD 681
G T L LA KY + +V ++ E+ L+NT + G +GKHRK + G
Sbjct: 110 GPEVTRLAALAGKYKIFLVMGVV---ERVGYTLYNTVLFFDPLGKYLGKHRK--VMPTGL 164
Query: 682 FNESNYYMEGNTGHPVFAXXYGKIAVNICF 771
+ +G+T PV+ GKI IC+
Sbjct: 165 ERVFWGFGDGST-IPVYDTPIGKIGAVICW 193
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 577 DEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPXVGDFNESNYYMEGNTGHPVFAXX 741
D+ H +NT V+I D+G + +RK H +P + ES + G+T V +
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDS-P 226
Query: 742 YGKIAVNICF 771
+G++ + +C+
Sbjct: 227 FGRLGLTVCY 236
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 476 HHGCFSLVQNAKGIFHNXWKQMMLTPSWP--ATSMIFLTLLKIXFF 345
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +1
Query: 502 GATTTFLRELAIKYAMVIVSSILXRDEKHSDILWNTAVVISDTGNVIGKHRKNHIPXVGD 681
G T L +A KY + +V ++ E+ L+ + + G +GKHRK +P +
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVI---EREGYTLYCSVLFFDPLGRYLGKHRK-LMPTALE 169
Query: 682 FNESNYYMEGNTGHPVFAXXYGKIAVNICF 771
+ +G+T PV+ GKI IC+
Sbjct: 170 -RIIWGFGDGST-IPVYDTPLGKIGALICW 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,837,432
Number of Sequences: 37544
Number of extensions: 410054
Number of successful extensions: 985
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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