Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E20
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   204   4e-53
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    28   9.1  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  204 bits (499), Expect = 4e-53
 Identities = 92/162 (56%), Positives = 108/162 (66%)
 Frame = +1

Query: 319 PTDRPXNEQXXXXXXXXXXXXDVAGQEGVNIICFQXLWNMPFAFCTREKQPWCEFAESGE 498
           PT     EQ            + A   G N+I  Q  W MPFAFCTRE+ PW EFAES  
Sbjct: 86  PTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPFAFCTRERLPWTEFAESVY 145

Query: 499 DGATTTFLRELAIKYAMVIVSSILXRDEKHSDILWNTAVVISDTGNVIGKHRKNHIPXVG 678
            G TT FL +LA+K+ +VI+S IL RDE+  D++WNTAVVIS TG VIG+ RKNHIP VG
Sbjct: 146 TGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGRVIGRSRKNHIPRVG 205

Query: 679 DFNESNYYMEGNTGHPVFAXXYGKIAVNICFGRHHVLNWMMF 804
           DFNES YYME   GHPVF   YG+I +NIC+GRHH  NWMM+
Sbjct: 206 DFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMY 247


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 653 RCFPITFPVSLMTTAVFQSMSECFSSLXNIEDT-ITIAYLMASSRRKVVVA 504
           +C P+TF ++   T +       F+++  IE+T I IA L+  +   V++A
Sbjct: 75  KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLLA 125


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 583 SRPFXISRTRSPLRT*WRVPEGRSWSPRLHLIRQTRTTAASPL 455
           SR    SR+RSP+R   R  E RS SP+  L R+  + + SPL
Sbjct: 117 SRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREA-SRSRSPL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,346
Number of Sequences: 27780
Number of extensions: 335467
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)