Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E19
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...   136   5e-33
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    59   7e-10
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    50   6e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   4.5  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   5.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   5.9  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   7.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   7.8  

>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score =  136 bits (328), Expect = 5e-33
 Identities = 60/85 (70%), Positives = 75/85 (88%)
 Frame = +3

Query: 417 LPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDV 596
           LPIAN+A+IMK A+PEN KI+K+A++CVQ+C+SEFISFVT EAS++C  EKRKTI GEDV
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71

Query: 597 LFALNTLGFDNYVKPLRLYLTKYRE 671
           L ALNTLGF+NY + L++ LTKYRE
Sbjct: 72  LLALNTLGFENYAEVLKISLTKYRE 96


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 29/83 (34%), Positives = 47/83 (56%)
 Frame = +3

Query: 387 NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVE 566
           N    + +  LP A + K++   +P +    K+AR+ + EC  EFI  V+SEA++ C+ E
Sbjct: 2   NDGFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKE 61

Query: 567 KRKTINGEDVLFALNTLGFDNYV 635
            +KTI  E ++ AL  L F  Y+
Sbjct: 62  AKKTIAAEHIIKALENLEFKEYI 84


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 27/95 (28%), Positives = 49/95 (51%)
 Frame = +3

Query: 381 KSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCK 560
           KS       D  LP + I +++K  +PE   + K+A + +    + F+SF+TS + +   
Sbjct: 5   KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIAT 64

Query: 561 VEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKY 665
              RK +  +DVL AL+ + +  + K L+ +L  Y
Sbjct: 65  NNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAY 99


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 297 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 410
           NG  V D T VV S    ED+ N ++    N P+   +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -3

Query: 381 YSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISL 283
           Y   P C    TH  N       +P IH P+ L
Sbjct: 127 YDPRPGCLKFTTHEINVSYTDTSIPVIHIPVQL 159


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 649 CT*QNIEKLLCHQPYLQVTINKLNKTIVLYSEDGTACVSNE 771
           CT Q+ E     +  LQ  +N+ ++ I+ YS    +CV +E
Sbjct: 146 CTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHE 186


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 607 NANNTSSPLMVLRFSTLHLSLASLVTNDMNS 515
           N+N+ SSP+ V R STL  + A+    +M S
Sbjct: 529 NSNSKSSPVAVQRVSTLPQASANKQAKEMES 559


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 387  NAPLREQDRFLPIA-NIAKIMKRAIPENGKIAKDARECVQEC 509
            + P  E D    I  ++A +   +IP+N KI+  AR+ +++C
Sbjct: 1245 STPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQC 1286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,332
Number of Sequences: 5004
Number of extensions: 71264
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)