Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E17
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    35   0.007
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   0.83 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   1.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   2.5  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   3.3  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    26   3.3  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   5.8  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 34.7 bits (76), Expect = 0.007
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 274 RLRRHRLYTSLADHMSRNYPMASKEEVEXNQXNCAICWEPMKEAXKLPCISSLPQLVPMP 453
           R+R H  +      M+  YP A++E++  +   C IC E M      P   +  ++ P+P
Sbjct: 259 RIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPP--ENTDEMEPLP 316

Query: 454 VG 459
            G
Sbjct: 317 RG 318


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 416 PVSHLFHNSCLCQWVQ 463
           P  HL+H  CL QW++
Sbjct: 646 PCHHLYHRQCLLQWME 661


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 ASKEEVEXNQXNCAICWEPMKEAXKLPC 420
           ASKEE + ++  C IC E +  +  LPC
Sbjct: 69  ASKEEQDEDEQICFICAEGITYSCVLPC 96


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 398 RKLXNCPVSHLFHNSCLCQWV 460
           RKL  C   H FH +C+ QW+
Sbjct: 780 RKLQAC--KHFFHQACIDQWL 798


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 398 RKLXNCPVSHLFHNSCLCQWV 460
           R+L  C  +H FH  C+ QW+
Sbjct: 539 RRLKQC--NHFFHRECIDQWL 557


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 401 KLXNCPVSHLFHNSCLCQW 457
           ++   P  H FHN CL  W
Sbjct: 50  RIAKIPCGHYFHNHCLESW 68


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 401 KLXNCPVSHLFHNSCLCQWV 460
           K+   P  H FH  C+ +W+
Sbjct: 333 KVVALPCKHEFHRPCIAKWI 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,648
Number of Sequences: 5004
Number of extensions: 11830
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)