Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E17
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0897 - 29186821-29187459 31 0.35
12_01_0256 + 1895081-1895575,1896367-1896513,1897435-1897524 30 1.1
11_01_0258 + 1978191-1978404,1978464-1978693,1979601-1979966 30 1.1
08_01_0376 - 3320621-3321151 29 1.4
12_01_0271 - 1972992-1973585 28 3.3
12_01_0267 - 1939123-1939722 28 3.3
08_02_1103 - 24329120-24329623 28 3.3
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 28 3.3
11_01_0259 + 1981554-1982249 28 4.4
08_02_0937 + 22801526-22802461 28 4.4
02_05_0605 + 30300977-30301912 28 4.4
09_04_0233 - 15890085-15890234,15890345-15890551,15891112-158913... 27 5.8
03_02_1008 - 13170630-13171481 27 5.8
02_05_0316 - 27825871-27826509 27 5.8
12_01_0257 + 1898950-1899636 27 7.6
11_01_0227 + 1767191-1767847 27 7.6
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 27 7.6
>04_04_0897 - 29186821-29187459
Length = 212
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 386 GNR*RKLXNCPVSHLFHNSCLCQWVQQD 469
G+ R+L NC H+FH CL +W++ D
Sbjct: 122 GDEVRRLSNC--RHVFHRGCLDRWMEHD 147
>12_01_0256 + 1895081-1895575,1896367-1896513,1897435-1897524
Length = 243
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 401 KLXNCPVSHLFHNSCLCQWVQ 463
KL P H FH SC+ +W+Q
Sbjct: 145 KLRKMPCEHYFHESCVFKWLQ 165
>11_01_0258 + 1978191-1978404,1978464-1978693,1979601-1979966
Length = 269
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 401 KLXNCPVSHLFHNSCLCQWVQ 463
KL P H FH SC+ +W+Q
Sbjct: 128 KLRKMPCEHYFHESCVFKWLQ 148
>08_01_0376 - 3320621-3321151
Length = 176
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 383 AGNR*RKLXNCPVSHLFHNSCLCQWVQQ 466
A +R R+L NC +H FH +C+ +WV +
Sbjct: 116 ARHRVRELGNC--AHAFHKACIDKWVDK 141
>12_01_0271 - 1972992-1973585
Length = 197
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 401 KLXNCPVSHLFHNSCLCQWVQ 463
KL P SH FH +C+ W++
Sbjct: 158 KLTRMPCSHCFHATCILDWLR 178
>12_01_0267 - 1939123-1939722
Length = 199
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 401 KLXNCPVSHLFHNSCLCQWVQ 463
KL P SH FH +C+ W++
Sbjct: 160 KLTRMPCSHCFHATCILDWLR 180
>08_02_1103 - 24329120-24329623
Length = 167
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 416 PVSHLFHNSCLCQWVQQD 469
P HLFH +CL +W+ D
Sbjct: 117 PCGHLFHRACLEKWLDYD 134
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 49 LMSVLHVGARYVLQQRGADAAGALAYYTH 135
L SV+ V R LQ G + AGA +Y H
Sbjct: 290 LPSVVQVAVRAALQSSGQNCAGAERFYVH 318
>11_01_0259 + 1981554-1982249
Length = 231
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 275 GCGGTASTHRSRTT*VAITQWQAKRRLKXIXTIVQS--AGNR*RKLXNCPVSHLFHNSCL 448
G G T ++ + IT K K +Q G++ RK+ C SH FH C+
Sbjct: 115 GGGATPASSMAIVNLPEITVGDEKGEAKDCPVCLQGFEEGDKLRKMP-CADSHCFHEQCI 173
Query: 449 CQWV 460
W+
Sbjct: 174 FSWL 177
>08_02_0937 + 22801526-22802461
Length = 311
Score = 27.9 bits (59), Expect = 4.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 416 PVSHLFHNSCLCQWVQ 463
P HL+H+ C+ QW++
Sbjct: 191 PCGHLYHSECIVQWLE 206
>02_05_0605 + 30300977-30301912
Length = 311
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 383 AGNR*RKLXNCPVSHLFHNSCLCQWV 460
AG R R+L P +HL+H+ C+ W+
Sbjct: 240 AGERARRL---PCAHLYHDGCILPWL 262
>09_04_0233 -
15890085-15890234,15890345-15890551,15891112-15891356,
15891618-15891831,15892890-15893036
Length = 320
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 401 KLXNCPVSHLFHNSCLCQWVQQD 469
K+ P HLFH CL W+ ++
Sbjct: 252 KMQELPCKHLFHPPCLKPWLDEN 274
>03_02_1008 - 13170630-13171481
Length = 283
Score = 27.5 bits (58), Expect = 5.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 416 PVSHLFHNSCLCQWVQQ 466
P HL+H+ C+ W++Q
Sbjct: 204 PCKHLYHSDCIVPWLEQ 220
>02_05_0316 - 27825871-27826509
Length = 212
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 398 RKLXNCPVSHLFHNSCLCQWVQQD 469
R+L NC H+FH CL +W+ +
Sbjct: 130 RRLSNC--RHVFHRGCLDRWMAHE 151
>12_01_0257 + 1898950-1899636
Length = 228
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 275 GCGGTASTHRSRTT*VAITQWQAKRRLKXIXTIVQS--AGNR*RKLXNCPVSHLFHNSCL 448
G G T ++ + + IT K K +Q G++ R++ C SH FH C+
Sbjct: 115 GGGATPASSMAIVSLPEITVGDEKGEAKDCPVCLQGFEEGDKLRRMP-CADSHCFHEQCI 173
Query: 449 CQWV 460
W+
Sbjct: 174 FSWL 177
>11_01_0227 + 1767191-1767847
Length = 218
Score = 27.1 bits (57), Expect = 7.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 401 KLXNCPVSHLFHNSCLCQWVQ 463
+L P +H FH +CL +W++
Sbjct: 177 RLRTMPCNHSFHENCLFRWLR 197
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 319 SRNYPMASKEEVEXNQXNCAICWEPMKEAXKLPCISSL 432
SR Y +E++ + C IC E ++A PC L
Sbjct: 732 SRAYIEEVVQELQKGEGECPICLEAFEDAVLTPCAHRL 769
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,673,403
Number of Sequences: 37544
Number of extensions: 91952
Number of successful extensions: 427
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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