Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E17
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    39   0.002
Z30215-7|CAA82940.1|  322|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z29560-13|CAA82665.1|  322|Caenorhabditis elegans Hypothetical p...    27   6.8  
U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    27   6.8  
Z81593-8|CAD59162.1|   64|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 274 RLRRHRLYTSLADHMSRNYPMASKEEVEXNQXNCAICWEPMKEAXKLPC 420
           +L RHR +  + +H+ R+YP     +       C +CWE +  + +LPC
Sbjct: 305 QLSRHRNHKKIFEHIERSYPSV---KCANGDDRCVVCWELLGTSRRLPC 350



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 416 PVSHLFHNSCLCQWVQQD 469
           P SH FH+ CL  W+ QD
Sbjct: 349 PCSHQFHDWCLMWWLAQD 366


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 274 RLRRHRLYTSLADHMSRNYPMASKEEVEXNQXNCAICWEPMKEAXKLPC 420
           +L RHR +  + +H+ R+YP     +       C +CWE +  + +LPC
Sbjct: 305 QLSRHRNHKKIFEHIERSYPSV---KCANGDDRCVVCWELLGTSRRLPC 350



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 416 PVSHLFHNSCLCQWVQQD 469
           P SH FH+ CL  W+ QD
Sbjct: 349 PCSHQFHDWCLMWWLAQD 366


>Z30215-7|CAA82940.1|  322|Caenorhabditis elegans Hypothetical
           protein K03H1.10 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 361 NQXNCAICWEPMKEAXKLPCISSLPQLVPMPVGAAG 468
           ++ +C +C  P+K A  +P I SLP L  + +G  G
Sbjct: 92  SREDCPVC-TPLKRARDVPLIFSLPHLANL-IGTKG 125


>Z29560-13|CAA82665.1|  322|Caenorhabditis elegans Hypothetical
           protein K03H1.10 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 361 NQXNCAICWEPMKEAXKLPCISSLPQLVPMPVGAAG 468
           ++ +C +C  P+K A  +P I SLP L  + +G  G
Sbjct: 92  SREDCPVC-TPLKRARDVPLIFSLPHLANL-IGTKG 125


>U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical
           protein R10A10.2 protein.
          Length = 112

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 SHLFHNSCLCQWVQQD 469
           +H FH+ C+ QW++Q+
Sbjct: 80  NHSFHHCCMTQWIRQN 95


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 373 CAICWEPMKEAXKLPCISSLPQLVPMPV 456
           C  C  PM +  ++PC + +P  +PMPV
Sbjct: 27  CGGCPTPMCQP-RMPCAAPMPMPMPMPV 53


>Z81593-8|CAD59162.1|   64|Caenorhabditis elegans Hypothetical
           protein T20B3.14 protein.
          Length = 64

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +1

Query: 40  LLVLMSVLHVGARYVLQQRGA 102
           LLV+++++HV  ++ L++RGA
Sbjct: 8   LLVVLAIVHVTVQFTLEKRGA 28


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 416 PVSHLFHNSCLCQWVQQ 466
           P SH+FH  CL  W Q+
Sbjct: 309 PCSHVFHAHCLRSWFQR 325


>AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical
           protein C18B12.4 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 401 KLXNCPVSHLFHNSCLCQWVQQ 466
           KL + P  H+FH +C+  W+ Q
Sbjct: 259 KLRHLPCRHVFHCNCIDVWLTQ 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,198,003
Number of Sequences: 27780
Number of extensions: 72583
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)