Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E11
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    69   1e-12
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      68   1e-12
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    31   0.14 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   0.56 
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    27   2.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.2  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
 Frame = +2

Query: 128 EKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENI 307
           EKEA+EWIE  L  K        D L+ G +LC++  +    ++ +   +   F  MENI
Sbjct: 6   EKEAREWIEETLHTKLNAQLDLLDQLQSGVILCRICKEALGANI-RYKESNMPFVQMENI 64

Query: 308 TNF-QSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCLGPKPA 484
           + F   A +   VP  D+FQT DL+E+++  QV+ ++ +  R   +        LGPK A
Sbjct: 65  SAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLA 124

Query: 485 DECKRDFS-DEVLKAGQTVIGLQAGSNKGATQSGQNLGAGRK 607
           ++  R FS  +  +  + V  LQ GS    TQ  + +   R+
Sbjct: 125 EKKPRVFSAQQQREFREGVNSLQYGSFDMPTQGTEKIAFSRR 166


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
 Frame = +2

Query: 119 LXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGG-QFKM 295
           L +  EA++WIE  LG    P   FE  L++G VL  L+ K +P  + KI  +   QF+ 
Sbjct: 41  LCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRH 100

Query: 296 MENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 424
            +NI  F   I   G+P+I  F+  D++E K++ +V+  + AL
Sbjct: 101 SDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = +2

Query: 134 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITN 313
           EA++W+E     ++   + F D L +G VLCQL  K  P      +    ++++ E  T 
Sbjct: 69  EAKKWLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYP---KLASNWKPRYQISERNTV 125

Query: 314 FQSA----IKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 424
           + +A    +   G+     F+T DL  + +I +V+  L AL
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = -1

Query: 252 PGFSLLMSWQR----TVPSLRTSSNSSPGG--NLA-PRTPSIHSWASFSFXRVALGSDLS 94
           PG   L   QR    T P L TSS++ PGG  N+A   T S+   +S ++      + +S
Sbjct: 210 PGVGTLQQPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSSAYHPSGSSNGIS 269

Query: 93  ANLT 82
           A LT
Sbjct: 270 AGLT 273


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +2

Query: 53  SHNHTTCLWNVKFALRSLPS-----ATLXKEKEAQ-EWIEGVLGAKF-PPGELFEDVLKD 211
           S +HT  LW++K +   +P       TL  E+  Q ++ + VL  K  P G      L D
Sbjct: 496 SADHTVKLWSLKSSFDFVPGTTRKVTTLKLEQTRQIDFTDDVLAVKISPDGRFVAASLLD 555

Query: 212 GTVLCQLINKLK 247
            TV    ++ LK
Sbjct: 556 NTVKVYYLDSLK 567


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 101  SLPSATLXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTV--LCQLINKLKPGSVPKIN 271
            SLP      EKEA++++    G K    EL++ +  D  V  +  L+N L   S PK+N
Sbjct: 1771 SLPGLNASSEKEARDYLNKFAGNK--TDELYQMLCNDPNVFDIESLVNSLI--SYPKMN 1825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,780
Number of Sequences: 5004
Number of extensions: 68481
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)