Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E08
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 51 2e-07
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 33 0.049
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 1.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 1.1
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 29 1.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 28 1.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 28 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 5.6
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 26 5.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 5.6
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 5.6
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 5.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.9
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 9.9
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = +2
Query: 494 DQLIMHQKVELLEAFVGFETNNKYTVMNSVGQKVYYAIEDN-----DCCTRNCCGPLRPF 658
D LI+ +++E++ F+G+E N+Y ++N GQ + Y E +R R F
Sbjct: 77 DVLIVERQLEMMNVFLGYEQANRYVILNQQGQHLGYIAEQGASSILSSLSRQFFHTHRAF 136
Query: 659 DMKIMDNFNNEVIHLNRPLACDSCCCPCWLQIMEVSAPPGTLIGSVEXKWSI 814
+MD+ V+ LNRP + + + ++ S TL+G V KW +
Sbjct: 137 KADVMDSNGQLVLQLNRPFSWIN--SRLQIHSIDYSKFSSTLVGEVLQKWHL 186
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 33.1 bits (72), Expect = 0.049
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +2
Query: 524 LLEAFVGFETNNKYTVMNSVGQKVYYAIEDNDCCTRNCCGPLRPFDMKIMDNFNNEVIH 700
L+ G K TV +K + I D D R P P +KI F NEV+H
Sbjct: 2 LILGLTGSIATGKSTVSREFQEKYHIKIIDADVLARKVVEPNTPCLIKIQKEFGNEVLH 60
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 317 FQPGFQPGYQPGFAPGYPQ-PSGYPVPVMQQPGPQAPGGWMNMPQGLSNCPR 469
+ P QPGY P + P Y Q P P M + G Q + P + PR
Sbjct: 410 YGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQVSDQVVESPNSSTLSPR 461
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.7 bits (61), Expect = 1.1
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Frame = +2
Query: 287 AQPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLSN-C 463
A P P G P QP Y P YP Y PV QP A G + LSN
Sbjct: 98 AAPQPYPPQGGYPQ-QPYYYPNQPNYYPAQPAYAQPVYAQPATSARRGRSGV---LSNPM 153
Query: 464 PRGLEYLSMIDQLIMHQKVELLE--AFVGFETNNKYTVMNSVG 586
GL L ++ L MH+ E + V + +N Y + G
Sbjct: 154 VTGLGGL-LVGGLAMHEMDEAFDRPEEVVYVDDNNYNNFDDYG 195
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 467 RGLEYLSMIDQLIMHQKVELL-EAFVGFET-NNKYTVMNSVGQKVYYAIEDNDC 622
R YL + L+ + +++ EA VGF T NN ++ + Q V Y ++D +C
Sbjct: 713 RSFTYLKEDEMLVASVRDDIVSEAVVGFSTDNNGQKILADISQ-VCYCLDDLEC 765
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 299 PGMQHGFQPGFQPGYQPGFAPG 364
PG G PG PG PG APG
Sbjct: 615 PGGMPGAAPGAAPGAAPGAAPG 636
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 308 QHGFQPGFQPGYQPGFAPG 364
Q G PG PG PG APG
Sbjct: 610 QAGGAPGGMPGAAPGAAPG 628
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 659 DMKIMDNFNNEVIHLNRPLACDSCCCPCWL 748
D ++ D+ NN++ +++ P A SCC P L
Sbjct: 146 DTQLADHLNNKM-NISAPTAIQSCCLPALL 174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +2
Query: 314 GFQPGFQPGYQPGFAP---GY--PQPSGYPVPVMQQPG----PQAPGG 430
GF Q G PGFAP G+ PQP+G+ + QQP PQ GG
Sbjct: 110 GFMQPQQTGAIPGFAPQPTGFVQPQPTGF---MSQQPASFMQPQRTGG 154
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 290 QPLPGMQHGFQPGF--QPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQ 448
QP+ + G QP + G QP PG QP MQ PQ G MPQ
Sbjct: 633 QPMAPQRTGMQPMMPQRTGMQPQM-PGMQQPMAPQRTGMQPMAPQRTGMQPMMPQ 686
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +2
Query: 290 QPLPGMQHGFQP---GFQPGYQPGFAPGYPQPSGYPVPVMQQ 406
QP+ + G QP GFQ P PQ +G+ P+M Q
Sbjct: 456 QPMMPQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQ 497
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 214 PHASSKRLSWPTTYSYATPRPTSWGTTPSGHAAWVPARIS 333
P S+ R S P+ +S A+P PTS S A+ PAR S
Sbjct: 1247 PSVSTPRSSVPSPHSNASPSPTS-----SSMASAAPARTS 1281
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 713 EDDSDESPHY*SCP*FSYRKDVKVRSSFLCSNHYPQSHNKLF 588
++D P S P SYR+ V SS + P HN++F
Sbjct: 546 QEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIF 587
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Frame = +2
Query: 293 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP---VPV-----MQQPGPQAPGG 430
P P Q P + P Q GY P GYP P +QQP PGG
Sbjct: 14 PAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYPAQQPMYVQQPQASDPGG 67
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 713 EDDSDESPHY*SCP*FSYRKDVKVRSSFLCSNHYPQSHNKLF 588
++D P S P SYR+ V SS + P HN++F
Sbjct: 546 QEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIF 587
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +2
Query: 323 PGFQPGYQPGFAPGYPQPSGYPV-PVMQQPGPQAPG 427
P P P Y P Y V QQP PQ PG
Sbjct: 180 PAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPG 215
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 113 ELTMSHKPTPYSPNFPASHGYVPPPEGEK 199
E+T+++ S F S+G++P PEG++
Sbjct: 226 EVTINYGSEKGSAEFLFSYGFLPEPEGDR 254
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 131 KPTPYSPNFPASHGYVPPPEGEKPNES 211
KPTP+ + PA V P E KP+ S
Sbjct: 252 KPTPFESHGPAKQISVQPSEHPKPSIS 278
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 671 MDNFNNEVIHLNRPLACDSCCCPCWLQIMEVSAPPGTLIGSVEXKWSI 814
+DN E I SCC ++I E S P GT++ E W +
Sbjct: 436 LDNLQEEKISDVLFSKISSCCFAHDIEISENSTPSGTMVQFAEL-WQV 482
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 503 IMHQKVELLEAFVGFETNNKYTVMNSVGQKVYYAIED 613
+ H KV+ ++ GF T+++ V ++ +Y I+D
Sbjct: 245 LQHSKVQNVDQKSGFLTSSETDVPKNINDYIYLLIDD 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,437
Number of Sequences: 5004
Number of extensions: 65897
Number of successful extensions: 216
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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