Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_E03
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 195 5e-51
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 28 1.7
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 27 2.3
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 2.3
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 3.0
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ... 27 4.0
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 4.0
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 5.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 7.0
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 7.0
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 9.3
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 195 bits (476), Expect = 5e-51
Identities = 89/200 (44%), Positives = 129/200 (64%), Gaps = 6/200 (3%)
Frame = +2
Query: 203 YETLVETANFLLSRISE---KPNIGIICGSGMGSLAESITDGV-RIPYEDIPNFPISTVE 370
Y +E +++ ++ E KP + IICGSG+G+LA ++ V +PYEDIP+F +S V
Sbjct: 20 YIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVP 79
Query: 371 GHHGQLVFGHI--EGVSVVAMQGRFHYYEGYPLWKCCLPVRVMKLLGVKILIATNAAGGL 544
GH +L F + + V + + GR+H YEGYP+ PVR+MK++GV++++ TNAAGGL
Sbjct: 80 GHASKLYFAFLGEKRVPTMILAGRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGL 139
Query: 545 NPNYKIGDLMIVRDHINMMGFAGNNPLHGPNDERFGPXFPPMNKAYNYEFRKIAKEVAKE 724
N +K+GDLMI++DHIN G AG NPL GPN FG FPP++ AY+ E RK+ + AK
Sbjct: 140 NQGFKVGDLMILKDHINFPGLAGMNPLRGPNAHEFGVRFPPLSDAYDLELRKLVYDAAKA 199
Query: 725 LNIDHIVREGVYTCLGGPNF 784
+ + EG Y + GP F
Sbjct: 200 HKVSRTIHEGCYAFVSGPCF 219
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 182 NEKTGYSYETLVETANFLLSRISEKP-NIGIIC 277
NE+ G+S E LV T +L ++ E P +I IC
Sbjct: 68 NEEKGFSLEALVATCIYLSCKVEECPVHIRTIC 100
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 155 PEIGSDCNGNEKTGYSYETLVETANFLLSRISEKPN-IGIICGSGMGSLAESIT 313
PE + NE Y Y T + A F++ + PN I I+ M +LA +++
Sbjct: 116 PEYETANTNNES--YIYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALS 167
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 241 ENIRETEHWHHLRLWDGFTSRKYNRRGKNTIRR 339
+++RET+ H+ +W G SRK N +RR
Sbjct: 670 KSLRETDFCHNASIWIGTESRKVLNIPLNDLRR 702
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 245 ISEKPNIGIICGSGMGSLAESITDGVRI-PYEDIPNF 352
+S PN ++CGS G + D VR+ P E + NF
Sbjct: 261 VSSLPNGDLVCGSSDGFVRIFTVDKVRVAPTEVLKNF 297
>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
Orc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 353 PISTVEGHHGQLVFGHIEGVSVVAMQGRFHY---YEGYPLWKCCLPVRV 490
P++ +EG+ Q I+ S +A + Y + YP+WK C+ R+
Sbjct: 204 PLNGIEGYESQKQ--RIKPWSGIASMIQIDYEKRLQNYPIWKACIEERI 250
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 380 HDDPPLCLWESLEYLR-MVFLPRLLYFLLVN 291
H D +C+ S+ +L +V +PR LYFLL +
Sbjct: 188 HKDAIICMMLSVIWLFCLVAIPRFLYFLLAS 218
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 183 FPLQSDPISGKTFCVTKQFFSTISFAFIGAITTLSYRKIKAKNK*NDVQCPMSELPIIGR 4
F D + FC+ +QF I I + TL I +KN+ ++Q M PI+ R
Sbjct: 281 FGPNGDEYITQLFCLVRQFDPCIRLLSISCLVTLYKAGILSKNQTKEIQ--MIVTPILIR 338
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 117 SWRKIVWSR-RRSCRKSDLIVMEMKKLDILMKH*W 218
SW K+V + ++SC K + E + IL KH W
Sbjct: 2220 SWLKLVLADPKKSCEKEFSKIWESMRYLILFKHAW 2254
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 542 LNPNYKIGDLMIVRDHINMMGF 607
+NPNY G + V DH+ + G+
Sbjct: 189 VNPNYITGSSLAVYDHVRIDGY 210
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 9.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -3
Query: 457 ISFVVMKTALHSNDGHSFYVTENKLTMMTLHCAYGK----VWNIF---VWYSYPVCYTFC 299
I FV+ +L + + F ++ T MTL G+ + N+F W+ PVCY C
Sbjct: 159 IGFVLFVASLKKGN-YKFQFSQFCWTHMTLLLVVGQSHFMINNLFEGLFWFFVPVCYVVC 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,495
Number of Sequences: 5004
Number of extensions: 76453
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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