Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_E03
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical ...   172   3e-43
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical
           protein K02D7.1 protein.
          Length = 301

 Score =  172 bits (418), Expect = 3e-43
 Identities = 84/199 (42%), Positives = 125/199 (62%), Gaps = 4/199 (2%)
 Frame = +2

Query: 200 SYETLVETANFLLSRISE---KPNIGIICGSGMGSLAESITDGVRIPYEDIPNFPISTVE 370
           +Y+ ++  A  +  ++ E   + ++GIICGSG+G + +++ D   +PY  IP FP + V 
Sbjct: 21  NYDDVLSVAASIREQVGEDVARADLGIICGSGLGPIGDTVQDATILPYSKIPGFPTTHVV 80

Query: 371 GHHGQLVFGHIEGVSVVAMQGRFHYYE-GYPLWKCCLPVRVMKLLGVKILIATNAAGGLN 547
           GH G ++FG + G  VV +QGRFH YE    L  C LPVRVM  LG+KI+I +NAAGG+N
Sbjct: 81  GHKGNMIFGKLGGKKVVCLQGRFHPYEHNMDLALCTLPVRVMHQLGIKIMIVSNAAGGIN 140

Query: 548 PNYKIGDLMIVRDHINMMGFAGNNPLHGPNDERFGPXFPPMNKAYNYEFRKIAKEVAKEL 727
              + GDLM+++DHI +   AG +PL G ND RFG  F  ++ AY+ + R++A +V +  
Sbjct: 141 AVLRHGDLMLIKDHIFLPALAGFSPLVGCNDPRFGARFVSVHDAYDKQLRQLAIDVGR-- 198

Query: 728 NIDHIVREGVYTCLGGPNF 784
             D  + EGVY   GGP +
Sbjct: 199 RSDMTLYEGVYVMSGGPQY 217


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 128 FSPRYRSRL*VPLPHLVIEKLKRKINRTMFSARCLSYQ 15
           + P    +  +PLP LV  K   +    MFSARC  Y+
Sbjct: 744 YEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYK 781


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 128 FSPRYRSRL*VPLPHLVIEKLKRKINRTMFSARCLSYQ 15
           + P    +  +PLP LV  K   +    MFSARC  Y+
Sbjct: 720 YEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYK 757


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 412 HSFYVTENKLTMMTLHCAYGKVWNIFV 332
           +S Y  ENKLTM+   C  G V NI V
Sbjct: 97  YSTYFFENKLTMLLEFCGGGAVDNIIV 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,400,871
Number of Sequences: 27780
Number of extensions: 430747
Number of successful extensions: 1099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)