Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D24
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    64   1e-11
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   3.7  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   8.5  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 35/97 (36%), Positives = 53/97 (54%)
 Frame = +1

Query: 163 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVXDYALAVXFI 342
           EE + +Y  +F+    D +E+++G+N+    D+VP   +I+ AL A RRV D+  AV   
Sbjct: 45  EEINTKYNDFFSNVQ-DQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRIF 103

Query: 343 EACKDKCGNKVNEIYPYXIQEIXPTLXELGIDXPEEL 453
           E  K K   K  E Y   ++E+ P   ELGI   E+L
Sbjct: 104 EGIKVKLPTK--EQYQAYVKELKPVCNELGIVLKEDL 138


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 477 SELWLIVAKLLRXVNTQFGESRXDLLNXVWVDFIHFVS 364
           S++WL ++K L  VNT        +   VW+   H+++
Sbjct: 258 SDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHYLN 295


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 465 LIVAKLLRXVNTQFGESRXDLLNXVWV--DFIHFVST 361
           L++ +LL     Q GES  DL   +W+  DF + + +
Sbjct: 32  LLIPQLLENYKNQSGESISDLFLIIWLIGDFFNVLGS 68


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 173 ITDMKHISTEKTLMVGKSAKE 235
           ++D++H   EKTL++GK   E
Sbjct: 276 VSDLEHEVKEKTLLIGKLQHE 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,279
Number of Sequences: 5004
Number of extensions: 38120
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)