Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D24
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353     36   0.018
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    28   4.9  
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701...    28   4.9  
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234...    27   6.5  
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852     27   8.6  

>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
          Length = 135

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 137 HTEVQWKVMKNSITDMKHISTEKTLMVGKSAKE*MTSVVW-ISFPTQRLSKLP--FMHA 304
           H +++WK   ++    KH  TEK L  G S  E  TS  W +    Q + KL   +MHA
Sbjct: 71  HYQLRWKGKLSTSGSCKHSETEKLLYRGLSKSERYTSTFWMVCMDNQSIKKLDNNYMHA 129


>07_01_0464 -
           3504264-3504475,3504842-3505031,3505310-3505408,
           3505561-3505653,3505926-3506891,3507267-3507485,
           3508038-3508247,3508371-3508630,3508956-3510737,
           3510796-3511009
          Length = 1414

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -2

Query: 337 TXLQGHNHXLVCMHEGQL**SLGRERDPYHRGHSFLCGFPNHQCLFC 197
           T  +G +H  V   EG     LG  R   H  H  L GF   QC FC
Sbjct: 101 TLARGLHHRAVTTTEG-----LGSSRRGLHALHERLAGFHASQCGFC 142


>01_06_1714 -
           39368509-39369153,39369607-39369850,39369995-39370191,
           39370607-39370708,39370826-39371026,39371138-39371381,
           39371813-39371983,39372450-39372751
          Length = 701

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 336 PDCKGIIXDSSACMKGSFDNLWVGNEIHTTEVIHSFADFPTINVFSVEICFISVIE 169
           P+ K  +  S  C+    + L + +    T V+HSFA +P IN  +  + +IS +E
Sbjct: 314 PNVKRGLYLSIECINTLNEGLVLHHASGMTYVLHSFARYPAINKPAAVLHWISHVE 369


>10_01_0217 +
           2337950-2338085,2340766-2342436,2342636-2342898,
           2343027-2343236,2343436-2343654,2344038-2345000,
           2345279-2345374,2345482-2345580,2345953-2346142,
           2346594-2346823
          Length = 1358

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 337 TXLQGHNHXLVCMHEGQL**SLGRERDPYHRGHSFLCGFPNHQCLFC 197
           T L   +H  V   EG     +G  RD +H     L GF   QC FC
Sbjct: 75  TLLGSLHHCAVTTSEG-----IGNSRDGFHPVQRRLAGFHASQCGFC 116


>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
          Length = 764

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 340 IEACKDKCGNKVNEIYPYXI 399
           +  C+DKCGN +N  YP+ I
Sbjct: 34  LTGCRDKCGN-INVPYPFGI 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,372
Number of Sequences: 37544
Number of extensions: 243100
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)