Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D24
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52499| Best HMM Match : COX5A (HMM E-Value=0)                      137   4e-33
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   31   0.71 
SB_39596| Best HMM Match : TTL (HMM E-Value=0)                         30   1.2  
SB_56875| Best HMM Match : LON (HMM E-Value=0)                         28   5.0  
SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)         28   5.0  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)                  27   6.6  

>SB_52499| Best HMM Match : COX5A (HMM E-Value=0)
          Length = 208

 Score =  137 bits (332), Expect = 4e-33
 Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
 Frame = +1

Query: 148 PVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVXDYAL 327
           PVES+E FD R+EAYF+R DID WE+R+G+N+L G DLVP+PKII A  HACRR+ DY  
Sbjct: 104 PVESEEAFDARWEAYFSRPDIDAWELRRGLNELYGHDLVPEPKIINAMFHACRRLNDYGT 163

Query: 328 AVXFIEACKDK-CGNKVNEIYPYXIQEIXPTLXELGIDXPEELGYDK 465
            V  +EA KDK  GNK  EIYPY +Q+  P + ELGI  PEELG  K
Sbjct: 164 TVRILEAVKDKAAGNK--EIYPYILQQCKPVMEELGILTPEELGLAK 208


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 420 ESRXDLLNXVWVDFIHFVSTFVFAGFYKPDCKGIIXDSSACMKGSFDNL 274
           E     ++ +W D  HF S      + +  C G I D+S C+K    +L
Sbjct: 436 EKYSQAIDVLWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTSSL 484


>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  EIRIRCVCKCP*KI-ISSCREGQRRICTEITRRSSGK 158
           ++RI  + KC   + I  CREG  R CTE+ R  S K
Sbjct: 434 DLRIYVLVKCLDPLEIYVCREGMGRFCTEVYRPPSQK 470


>SB_56875| Best HMM Match : LON (HMM E-Value=0)
          Length = 925

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 216 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 311
           +GN + N  P W   RS+ KD QS P    T+
Sbjct: 846 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 877


>SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
          Length = 455

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 216 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 311
           +GN + N  P W   RS+ KD QS P    T+
Sbjct: 376 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 407


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 274 LGRERDPYHRGHSFLCG 224
           +GRE  PY + HS++CG
Sbjct: 248 IGREIQPYSKPHSYVCG 264


>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 137 HTEVQWKVMKNSITDMKHISTEKTLMVGKSAKE 235
           HT  +    KNS T +KH+    T  +G SAKE
Sbjct: 176 HTGARKAFTKNSRTLLKHVKEIATKSMGDSAKE 208


>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
          Length = 1226

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 243  PLWYGSRSRPKDYQSCPS-CMQTSX*LCPCSXVYRSLQRQMWKQSE*NLPIXHSRDXAYS 419
            P W G+  RP   QS PS  M  +  LC  +   R+    M   S+ ++P     +  + 
Sbjct: 853  PPWGGTAERPPPRQSAPSRSMAITSLLCGSTFERRTTVLSMGVVSDWSIPATSPYNTEHI 912

Query: 420  XRTG 431
             R+G
Sbjct: 913  RRSG 916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,095
Number of Sequences: 59808
Number of extensions: 285044
Number of successful extensions: 579
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)