Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D23
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   0.74 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   0.74 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   3.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   5.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   6.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   9.2  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    21   9.2  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 259 GTPNQMKRGVMPKMA 215
           G  NQ KRG+ PK+A
Sbjct: 175 GKKNQKKRGIFPKVA 189


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 259 GTPNQMKRGVMPKMA 215
           G  NQ KRG+ PK+A
Sbjct: 331 GKKNQKKRGIFPKVA 345


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 143 SITLIFLDWNHTRKWKAQQIKV*NGHLRHHSSLHLVWCSDDRVL 274
           S  L+FLD+N ++K +   I + +G     +  HL+   DDR +
Sbjct: 149 SEVLLFLDYNPSQKRQFLHITLASGRTLTVTPSHLL-VLDDRTM 191


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 210 YTLIC*AFHLRVWFQSRKI 154
           +TL+     +++WFQ+R++
Sbjct: 268 HTLVLSERQIKIWFQNRRM 286


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 210 YTLIC*AFHLRVWFQSRKI 154
           +TL+     +++WFQ+R++
Sbjct: 268 HTLVLSERQIKIWFQNRRM 286


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 361 SLTLPPNKADLSRKLVILKVSWSSRNLPMKNPVIGT 254
           S  LPP  +  +R  +  K +      P   PV+ T
Sbjct: 158 STPLPPTTSTTTRTTLTTKFTTKPSTKPTNKPVVVT 193


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 248 PNEARSDAEDGH 213
           PNE   D E+GH
Sbjct: 910 PNEVTCDEEEGH 921


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 212 NGHLRHHSSLHLVWCSD 262
           N H++ HS+++   C D
Sbjct: 275 NSHMKSHSNVYRYSCRD 291


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 212 NGHLRHHSSLHLVWCSD 262
           N H++ HS+++   C D
Sbjct: 33  NSHMKSHSNVYRYSCRD 49


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 217 AILYFDLLSFPLASVVPVKKNKRNAY 140
           A +Y DLL F     +P K N+R+ +
Sbjct: 97  AEIYPDLLKFDPDRFLPDKVNERHPF 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,667
Number of Sequences: 336
Number of extensions: 2413
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)