Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D22
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.3  

>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 141 KINHVCLSLGPIT*MSLISDFIVTCQNIYARVTTAH 34
           KI+ VC+ L  +T + L+ +F++T  N   ++  AH
Sbjct: 22  KIHQVCIPLLLLTALVLLHNFVITLINSKLQINVAH 57


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 460 PQPSLHCIRQNGYFSHEDPKECGKFYFCVDGKFNMITCPDGLVYNDKTGI 609
           P   L  + +N Y    DPK   +F F  DG  +  T  D L   D+  I
Sbjct: 723 PTRGLKMLSENEYVDINDPKAIAEFLFRADG-IDKTTLGDYLGEGDEKSI 771


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 99   MSLISDFIVTCQNIYARVTTAHNSAAMLFIGRP 1
            +S +S F+V  + IYA V T +NS     IG+P
Sbjct: 1482 ISNVSGFVVNVE-IYAEVKTENNSWIFKSIGQP 1513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,065
Number of Sequences: 5004
Number of extensions: 59903
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)