Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D21
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    28   1.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   4.6  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   4.6  

>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 534 IVFDKANEV*LAIPKKILKFEHQALLKNLLQTSHDFQ 424
           + F K + +    P+ + K+ H+AL +   + +HDFQ
Sbjct: 48  VYFAKPSPIDENYPRSVAKYLHEALYRQKGENNHDFQ 84


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 277 NRLIRLPSPRTSIGASSSSPNLFDSKSV 194
           N L  LP+P + + ++ SS NLF S S+
Sbjct: 207 NSLYPLPTPTSQLPSNLSSNNLFQSDSL 234


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 452 FFNSAWCSNFNIFFGMAS*TSFALSKTI 535
           +FNSA CS+F I  G  S TS  L++ +
Sbjct: 190 YFNSAPCSSFMIKCGHVSNTSTELAENV 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,734
Number of Sequences: 5004
Number of extensions: 63893
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)