Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D21
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0416 + 13684604-13688050                                         28   6.3  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    28   8.3  
01_05_0271 + 20276965-20278674                                         28   8.3  

>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  CIQHGSCKQLVHSPSGLHQLNKMATLN 98
           C+  G C +L+  P G+  L ++A LN
Sbjct: 642 CLDLGYCHELMEFPKGIANLRRLAVLN 668


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 207 SNRFGEDEEAPIEVRGDG-NLINRLNSLPIENQPFWYLNWKAYEALRKRP 353
           S+R+ E     I V G G N +NR+    ++   FW +N   ++A+R  P
Sbjct: 110 SHRYSEPRIKVIGVGGGGSNAVNRMIESDMKGVEFWIVN-TDFQAMRMSP 158


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 165 GQRKTVFGLLQTLPES*KRKVWCLMLPSC 79
           GQ K  +GL+QT+P      VW  +L  C
Sbjct: 472 GQLKEAYGLIQTMPAPADSGVWGALLWGC 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,771
Number of Sequences: 37544
Number of extensions: 367490
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)