Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D20
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.68 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   0.90 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   3.6  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    25   8.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 21/85 (24%), Positives = 40/85 (47%)
 Frame = +2

Query: 152  GLLIL*REHHGNLLVAAAIRRVQLGLTIGPVKVYLVYCMALQQPSL*GMKNLFTQAKGQY 331
            G+++L +   G   +   ++   L + I  + VY++   AL + SL G  N+ T+     
Sbjct: 2169 GIILLGKTGSGKSQIFRILQSALLNIGIDCI-VYVISPKALTKESLFGSMNMDTREWTDG 2227

Query: 332  QYTFCFQKIKDLCIKTPYCKHYLLI 406
             +T   +K +D C    Y K Y+ +
Sbjct: 2228 VFTKLLRKTRDSC----YYKRYMFV 2248


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 329 YQYTFCFQKIKDLCIKTP 382
           Y Y+FCFQK   +C+ +P
Sbjct: 119 YGYSFCFQKFLKICLFSP 136


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 338  TFCFQKIKDLCIKTPYCKHYLLIKKTKVWYS 430
            TFC   I  LCI    C H +     K W+S
Sbjct: 1266 TFCCLSIHGLCIVCGLCLHVMHEDCYKEWFS 1296


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 43  IRQXWKCMATLIAXFSNKPTSSE--VLTAYL 129
           +   WK + T+++ + N+PT  E  +L  YL
Sbjct: 70  VNAYWKLIHTVVSNYPNRPTLDERDILRHYL 100


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 268 GLAATQLIRHEELVHTSKGPVPIYFLL 348
           GL A+Q+   EE V ++    P+YFLL
Sbjct: 111 GLPASQVPAAEEEVESTPKAKPLYFLL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,322
Number of Sequences: 5004
Number of extensions: 42756
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)