Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D15
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.5  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   2.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   7.6  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 477 IYYKNLVQNLFITSINILI*SDFSLFK 397
           + +K  +Q LFIT I  LI  D SLF+
Sbjct: 9   LLFKRYLQRLFITRILTLIRLDLSLFR 35


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 456 QNLFITSINILI*SDFSLFKLCCISFSSSLDHACI 352
           QNL++ +IN  +  DF   K+C +S ++   +AC+
Sbjct: 57  QNLYLDTINRKL-LDFDFEKVCSVSLTNLSVYACL 90


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 223 LIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSV 339
           +++ T S   S LL  E+P +PA    A   FT +T +V
Sbjct: 76  ILKETTSGSSSDLLNIESPASPAE---ASSPFTVRTPTV 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,317
Number of Sequences: 5004
Number of extensions: 34758
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)