Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D13
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    41   2e-04
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    29   0.53 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    29   0.71 
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe...    29   0.71 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   3.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   8.7  

>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
 Frame = +2

Query: 62  MAVCVAVIGKDNSPLY---IGGIGN--DTSSDNELSRQWLVHTALDALEERLTTANPNNS 226
           M    A+IG  ++P+Y   +G I    D S ++ L+ Q++VH++LD +++   T+N    
Sbjct: 1   MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLN-QFIVHSSLDIVDQLQWTSNA--- 56

Query: 227 GTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTA 406
                         Y+  +       I  YVT + ++ +L+  + S          ++  
Sbjct: 57  -------------FYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADN-------IKLF 96

Query: 407 LRRLHALYADAICNPFHLPGDQITSPKFDKQVKNI 511
            + LH LY   + +PF+ P   I S  FD +V++I
Sbjct: 97  FQELHELYIKTLMSPFYQPNQPIRSQAFDLKVRSI 131


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 101 PLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGT 232
           P Y   + ++ S D    R W+    L+  EE+   A P  S T
Sbjct: 526 PAYFVNLADEPSQDRSEGRYWVTGRTLEQAEEKAKAAFPGKSFT 569


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 146 ELSRQWLVHTALDALEERLTTANPNNSGTNTTTARTDLRDL 268
           + SR W     ++ LEE+L T  P     +T  A   LRDL
Sbjct: 390 DFSRPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDL 430


>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +2

Query: 68  VCVAVIGKDNSPLYIGGIGNDTSSDNELSR-QWLVHTALDALEERLTTANPNNSGTNTTT 244
           V +++ G  +  LY+  I  D    + L+R Q+L   +LD + + +      N G  T+ 
Sbjct: 7   VFLSIAGPKDEQLYLEII--DPKEKHLLARYQYLGELSLDVINDLV------NDGERTSN 58

Query: 245 ARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSS 358
                 D +LGLL   +    Y + +NT++K +L   +
Sbjct: 59  ------DCFLGLLGVEEDISTYAFYSNTKVKFILAVKA 90


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 425 LYADAICNP--FHLPGDQITSPKFDKQVKNIMLNNV 526
           +YA+ +  P  FH       S KFDK  K + +N+V
Sbjct: 229 VYAEDVIEPKTFHYKNGISISMKFDKDQKKLFINDV 264


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 179 LDALEERLTTANPNNSGTNT 238
           L+ L +RL+T NPNN+  +T
Sbjct: 67  LNQLCKRLSTGNPNNTNAST 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,115
Number of Sequences: 5004
Number of extensions: 49519
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)