Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_D13
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 100 2e-21
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264... 53 2e-07
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333... 30 1.7
11_08_0086 + 28268227-28270008 29 3.9
07_03_1234 + 25064187-25064900 29 3.9
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 28 6.8
02_03_0198 + 16251291-16252305,16252728-16252738 28 6.8
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 27 8.9
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 99.5 bits (237), Expect = 2e-21
Identities = 52/143 (36%), Positives = 82/143 (57%)
Frame = +2
Query: 62 MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 241
M +C +V N+PLY+ T +D+ L +VH +LD ++ER+ N N T
Sbjct: 144 MIICESV----NNPLYLQSF---TEADDALKLHHVVHCSLDVIDERVNNPKRNAPALNET 196
Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
+LGLL+ T+ +K+YGY+TNT++K ++VT+ +++DA+ R R+ H
Sbjct: 197 ---------FLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-----DVKDADARNFFRKFH 242
Query: 422 ALYADAICNPFHLPGDQITSPKF 490
A Y DA+ NPFH+PG +I S F
Sbjct: 243 AAYVDAVSNPFHVPGKKIASRSF 265
>04_04_0426 +
25125590-25125670,25126171-25126256,25126423-25126471,
25126547-25126675,25126973-25127055,25127791-25127959,
25128038-25128103
Length = 220
Score = 52.8 bits (121), Expect = 2e-07
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Frame = +2
Query: 71 CVAVIGKDNSPLYIGGIGN-DTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTTTA 247
C A++ K++ P+Y +G+ D Q+++H ALD +++ + N +
Sbjct: 6 CFAIVSKNDIPIYEAEVGSAPKKEDLAYQHQFILHAALDVVQDLAWSTN-----AMFLKS 60
Query: 248 RTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHAL 427
DL + + F + ++ + T + +L+ S S G +++ + +H L
Sbjct: 61 VDRFNDLVVSVYFYLYNNIVF-FNLMTHARFMLLHDSRSEDG-------IKSFFQEVHEL 112
Query: 428 YADAICNPFHLPGDQITSPKFDKQVK 505
Y NP +LPG +ITS FD +V+
Sbjct: 113 YIKIFLNPLYLPGSRITSSHFDTKVR 138
>01_05_0102 -
18131640-18131655,18132928-18133046,18133186-18133300,
18134072-18134325
Length = 167
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 284 FSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYAD-AICNPFHL 460
F T+T+K+ + + IKL+L+T + R + R L+ ++ LY + + NP +
Sbjct: 106 FKTNTYKLNFLESPSGIKLILIT--------HPRTGDQRDTLKHIYNLYVEYVVKNPLYA 157
Query: 461 PGDQI 475
PG I
Sbjct: 158 PGTPI 162
>11_08_0086 + 28268227-28270008
Length = 593
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 5 AALSDNSVFCFRFQMY*FTMAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALD 184
+AL D SVFC V + I K ++I GI ND+ + LSR V
Sbjct: 420 SALMDESVFCDGPN----PRDVALRNISKMQPDVFIQGITNDSYGASFLSRFRAVLLYYS 475
Query: 185 ALEERLTTANPNNSG 229
AL + L P +SG
Sbjct: 476 ALFDILDATTPRDSG 490
>07_03_1234 + 25064187-25064900
Length = 237
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 329 EYL*RSRKFYEYLWKTVILNTSPADQFGQWLC 234
+Y + F+ + W T+ L+T P D +W C
Sbjct: 57 DYFEETVSFFAHPWHTLTLSTIPDDDTNRWSC 88
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 351 PAPRRRAAVTS-GMPK*GRRCAGCTLCTLTPYAI 449
P PRRRAA +S G PK R GCTL A+
Sbjct: 209 PPPRRRAASSSQGQPK---RWVGCTLVVCPVVAV 239
>02_03_0198 + 16251291-16252305,16252728-16252738
Length = 341
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +2
Query: 188 LEERLTTANPNNSGTNTTTARTDLRD---LYL-------GLLFSTDTHKIYGYVTNTRIK 337
L+ TT +P N+ T DL D Y GL+FST T ++ + TR
Sbjct: 80 LQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDA 139
Query: 338 LVLVTSSTS 364
+ L TSS S
Sbjct: 140 ITLPTSSRS 148
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 117 ASATTPAATMSCPGSGSCTRRWTPWRRGSPLRILTIQERTQPL 245
++A T AAT + P S S + P R + LRIL R L
Sbjct: 7 SAAATAAATAAAPASSSTSSPSAPKRLTTTLRILCPSSRASAL 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,715
Number of Sequences: 37544
Number of extensions: 362431
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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