Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D13
         (614 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018024-1|AAH18024.1|  139|Homo sapiens trafficking protein par...   134   2e-31
BC011369-1|AAH11369.1|  139|Homo sapiens trafficking protein par...   134   2e-31
BC105809-1|AAI05810.1|  140|Homo sapiens trafficking protein par...   131   2e-30
AF089106-1|AAF00568.1|  140|Homo sapiens unknown protein.             131   2e-30
AK126779-1|BAC86686.1|  177|Homo sapiens protein ( Homo sapiens ...   126   8e-29

>BC018024-1|AAH18024.1|  139|Homo sapiens trafficking protein
           particle complex 2-like protein.
          Length = 139

 Score =  134 bits (324), Expect = 2e-31
 Identities = 67/152 (44%), Positives = 99/152 (65%)
 Frame = +2

Query: 62  MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 241
           MAVC+AVI K+N PLYI      T ++NEL   ++VHT+LD ++E+++            
Sbjct: 1   MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGK-------- 48

Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
            A  D R+LYLGLL+ T+ +K+YGYVTN+++K V+V  S   S + +RD E+R+  R+LH
Sbjct: 49  -ALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKLH 104

Query: 422 ALYADAICNPFHLPGDQITSPKFDKQVKNIML 517
             Y D +CNPF+ PGD+I S  FD  V ++M+
Sbjct: 105 NSYTDVMCNPFYNPGDRIQSRAFDNMVTSMMI 136


>BC011369-1|AAH11369.1|  139|Homo sapiens trafficking protein
           particle complex 2-like protein.
          Length = 139

 Score =  134 bits (324), Expect = 2e-31
 Identities = 67/152 (44%), Positives = 99/152 (65%)
 Frame = +2

Query: 62  MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 241
           MAVC+AVI K+N PLYI      T ++NEL   ++VHT+LD ++E+++            
Sbjct: 1   MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGK-------- 48

Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
            A  D R+LYLGLL+ T+ +K+YGYVTN+++K V+V  S   S + +RD E+R+  R+LH
Sbjct: 49  -ALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKLH 104

Query: 422 ALYADAICNPFHLPGDQITSPKFDKQVKNIML 517
             Y D +CNPF+ PGD+I S  FD  V ++M+
Sbjct: 105 NSYTDVMCNPFYNPGDRIQSRAFDNMVTSMMI 136


>BC105809-1|AAI05810.1|  140|Homo sapiens trafficking protein
           particle complex 2-like protein.
          Length = 140

 Score =  131 bits (317), Expect = 2e-30
 Identities = 67/153 (43%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
 Frame = +2

Query: 62  MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 241
           MAVC+AVI K+N PLYI      T ++NEL   ++VHT+LD ++E+++            
Sbjct: 1   MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGK-------- 48

Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
            A  D R+LYLGLL+ T+ +K+YGYVTN+++K V+V  S   S + +RD E+R+  R+LH
Sbjct: 49  -ALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKLH 104

Query: 422 ALYADAICNPFHLPGDQITSPK-FDKQVKNIML 517
             Y D +CNPF+ PGD+I S + FD  V ++M+
Sbjct: 105 NSYTDVMCNPFYNPGDRIQSSRAFDNMVTSMMI 137


>AF089106-1|AAF00568.1|  140|Homo sapiens unknown protein.
          Length = 140

 Score =  131 bits (317), Expect = 2e-30
 Identities = 67/153 (43%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
 Frame = +2

Query: 62  MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 241
           MAVC+AVI K+N PLYI      T ++NEL   ++VHT+LD ++E+++            
Sbjct: 1   MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGK-------- 48

Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
            A  D R+LYLGLL+ T+ +K+YGYVTN+++K V+V  S   S + +RD E+R+  R+LH
Sbjct: 49  -ALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKLH 104

Query: 422 ALYADAICNPFHLPGDQITSPK-FDKQVKNIML 517
             Y D +CNPF+ PGD+I S + FD  V ++M+
Sbjct: 105 NSYTDVMCNPFYNPGDRIQSSRAFDNMVTSMMI 137


>AK126779-1|BAC86686.1|  177|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44827 fis, clone BRACE3046837. ).
          Length = 177

 Score =  126 bits (303), Expect = 8e-29
 Identities = 63/140 (45%), Positives = 92/140 (65%)
 Frame = +2

Query: 62  MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 241
           MAVC+AVI K+N PLYI      T ++NEL   ++VHT+LD ++E+++            
Sbjct: 1   MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGK-------- 48

Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
            A  D R+LYLGLL+ T+ +K+YGYVTN+++K V+V  S   S + +RD E+R+  R+LH
Sbjct: 49  -ALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKLH 104

Query: 422 ALYADAICNPFHLPGDQITS 481
             Y D +CNPF+ PGD+I S
Sbjct: 105 NSYTDVMCNPFYNPGDRIQS 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,796,413
Number of Sequences: 237096
Number of extensions: 1927798
Number of successful extensions: 8036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8021
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)