Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_D13
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-6|AAA93486.1| 224|Caenorhabditis elegans Hypothetical pr... 35 0.053
U97552-2|AAB52862.1| 141|Caenorhabditis elegans Human sedl (spo... 29 2.0
U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription f... 28 6.1
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 28 6.1
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 28 6.1
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 28 6.1
AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinate... 28 6.1
AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of s... 28 6.1
AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of s... 28 6.1
>U53181-6|AAA93486.1| 224|Caenorhabditis elegans Hypothetical
protein F36D4.2 protein.
Length = 224
Score = 34.7 bits (76), Expect = 0.053
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 281 LFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYAD-AICNPFH 457
+ T K++ + T +K V++TS+ S ++ + L +++ LY D A+ NPF+
Sbjct: 141 VLETTQFKLFCLQSRTGVKFVVITSAASNIAAD-------SLLSKMYELYTDFALKNPFY 193
Query: 458 LPGDQITSPKFDKQVKNIM 514
I + KFD+ +K ++
Sbjct: 194 SIDMPIRAQKFDEAIKTLL 212
>U97552-2|AAB52862.1| 141|Caenorhabditis elegans Human sedl
(spondyloepiphysealdysplasia tarda) related protein 1
protein.
Length = 141
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Frame = +2
Query: 77 AVIGKDNSPLYIGG--IGNDTSSDNELSRQ---WLVHTALDALEERLTTANPNNSGTNTT 241
A+IG + P++ +G + ++E +R ++ H ALD ++E T +
Sbjct: 9 AIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEHALTTS--------- 59
Query: 242 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 421
+YL ++ + + +VT +RI+ +++ + + G ++ + ++
Sbjct: 60 -------QMYLKMVDKFNEWYVSAFVTASRIRFIMLHTHRADEG-------IKQFFQEMY 105
Query: 422 ALYADAICNPFHLPGDQITSPKFDKQ 499
Y NPF+ D I SP F+++
Sbjct: 106 ETYIKHAMNPFYEIDDVIESPAFEQK 131
>U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription
factor UNC-37 protein.
Length = 612
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 68 VCVAVIGKDNSPLYIGGIG 124
VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = +3
Query: 111 LVASATTPAATMSCPGSGSCTRRWTPWRRGSPLRILTIQERTQPLPELICGTC 269
L+ SA A S G +C TP P L I T P P C TC
Sbjct: 10 LLFSAPASAFFNSLFGGSNCGCSCTPPPSTCPTTCLPIMTCTPPSPPACCNTC 62
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 140 DNELSRQWLVHTALDALEERLTTANPNNS 226
D+EL + LV T L A+ R+T NP++S
Sbjct: 424 DSELPDEVLVDTKLHAIAARITCENPDDS 452
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 140 DNELSRQWLVHTALDALEERLTTANPNNS 226
D+EL + LV T L A+ R+T NP++S
Sbjct: 424 DSELPDEVLVDTKLHAIAARITCENPDDS 452
>AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinated
protein 37 protein.
Length = 612
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 68 VCVAVIGKDNSPLYIGGIG 124
VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343
>AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 68 VCVAVIGKDNSPLYIGGIG 124
VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343
>AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 68 VCVAVIGKDNSPLYIGGIG 124
VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,242
Number of Sequences: 27780
Number of extensions: 297996
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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