Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D12
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    28   3.1  

>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 237 REKKNLRTRKTIVLVVTVMTALKIGTLLLKKRQKWQTGLMIKSQXGCYR 383
           R KK LRT K +    T    L+I  +L+ + +  +T +  ++  GC+R
Sbjct: 479 RMKKCLRTLKVVGNGDTNEVCLQISNVLIIETEDLKTNVHFENSEGCFR 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,188,588
Number of Sequences: 37544
Number of extensions: 65041
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)