Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D07
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   1.3  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    28   1.8  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   4.1  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    26   5.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   7.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.5  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.5  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 28  EAIGDSTDTDSSRAGRTLRSTDNILNKQMSSKVSLFA*VIREANEDIPPSI 180
           E +GD  D    +      S +N LNK+MSS+ +  A  +R   + IPP++
Sbjct: 682 ELVGDPLDIKMFKFTHWSYSEENFLNKKMSSEQAEDAAYVR-TQQLIPPTV 731


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 602 ERLQYVHLLILYFPVHFDDFHERRAYVGAT 513
           E LQ+++ ++   P   D F  R  Y+G T
Sbjct: 183 EELQHIYKILTLTPASLDSFQNRPPYIGIT 212


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 512 RLRRHRHGAHESRRSVQGNTRSTNEH 589
           ++ +H H AHE R+ +   T  TN++
Sbjct: 305 KITKHNHPAHEIRKQLLSCTNQTNQN 330


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 450 SRLYVDAVGKLGRQAQQGTWGGCADIGTALMKVVEVYRE 566
           SRLY   +G L R++++  W G       +  V++V+ E
Sbjct: 67  SRLYNRVIGPLMRESEKNAWNGVIFYMIGVWIVLKVFPE 105


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 195 VNYVCEVLKSKFVCAYTVYPDEVSRVITTVFILVY--*KSLAMETEELTKLVDGIYKNIL 368
           +N++  +L   F C+Y+V+   V  ++  VFI V+        E +EL  L   I    L
Sbjct: 173 INHIL-ILLGYFQCSYSVFYASVFYILLGVFIRVFYLVNKEKFEKKELAFLFSSIVVACL 231

Query: 369 DKFN 380
            +FN
Sbjct: 232 IQFN 235


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 309 EIFNXXXXXXXXXXXXLHRDKQCMHKRISTLTLRTHNSHFNAQYTRWYILV 157
           EI+N             H     + K  STL  +T++  F A +T W I++
Sbjct: 34  EIYNSLVHHEPDLEEAAHASYSWVVKNFSTLEDKTYSPLFKAGHTTWRIVL 84


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 491 GATRNMGRLRRHRHGAHESRRSVQGNTRSTNEH 589
           G T +    R+ +  A +++  V GN   TN+H
Sbjct: 803 GTTNSQNEDRKKKIAAQKNKNPVHGNVGLTNQH 835


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 500 RNMGRLRRHRHGAHESRRSVQGNTRSTNEHIEG 598
           +N+G   + +    E  R VQG + +  E+++G
Sbjct: 479 KNLGNFTKQQEEVREKSRGVQGESAAHLENVDG 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,700
Number of Sequences: 5004
Number of extensions: 64002
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)