Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_D07
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 31 1.4
06_01_0487 - 3459853-3459917,3460058-3460408,3460991-3461114,346... 30 1.9
04_04_1226 - 31872413-31873036 29 3.2
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 29 4.3
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 29 5.7
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323... 28 7.5
09_02_0327 - 7284829-7284889,7284946-7286126 28 9.9
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 28 9.9
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 28 9.9
03_06_0288 + 32865414-32867249 28 9.9
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 534 PCLCRRNRPMFLVAPACPASPLRPRRDETPPPHHVELLNMPF 409
PC C + +P P P P +P ++ PP +L+ P+
Sbjct: 128 PCHCEKPKPCEKPPPCKPEEPPKPPPEKPPPKPECKLVPYPY 169
>06_01_0487 -
3459853-3459917,3460058-3460408,3460991-3461114,
3461226-3461359,3462277-3462412,3462486-3462834,
3463994-3464000,3464058-3464226
Length = 444
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 146 LEKRTRIYHRVYCALKCELCVRSVKVEIRLCIHCLSR 256
L R R+Y V L VR V+ ++C HCLSR
Sbjct: 351 LSDRRRLYQLVDPRLGLNYSVRGVQKVAQICYHCLSR 387
>04_04_1226 - 31872413-31873036
Length = 207
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 476 EAGQAGATRNMGRLRRHRHGAHESRRSVQ 562
EA +G+ R GR R+ +G HE SVQ
Sbjct: 16 EASSSGSKRKRGRPRKSEYGMHEKPYSVQ 44
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 204 VCEVLKSKFVCAYTVYPDEVSRVITTVFILVY*KSLAMETEELTKLVDGIYKNILDKFNP 383
VC + TVYP S + ++ + + L E++T +D I+KN+L+K+
Sbjct: 465 VCSAILETETSNSTVYP---SLPPPSPIVVAHAEELRYLIEDITVSMDAIFKNLLEKYKD 521
Query: 384 GAR 392
+R
Sbjct: 522 PSR 524
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 14 IRTESRR*ETLQTQIVLAPDARSAPQITS 100
+ TE RR ETL T +VL P R P+I+S
Sbjct: 6 VLTERRR-ETLTTDLVLIPICRQEPKISS 33
>11_01_0421 +
3236798-3237144,3237356-3237441,3237741-3237895,
3237971-3238035,3238180-3238363,3238785-3239048,
3239141-3239224,3239727-3239984,3240214-3240472,
3240550-3240755,3240896-3240946,3241041-3241337
Length = 751
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 599 RLQYVHLLIL--YFPVHFDDFH 540
R+ Y LL L YFPVHFD FH
Sbjct: 235 RIPYKALLGLHAYFPVHFDAFH 256
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 501 LVAPACPASPLRPRRDETPPPHHVELLN 418
L P+C +SP P +E PPP+ L +
Sbjct: 81 LDVPSCSSSPSPPSDEENPPPNPPSLFD 108
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 597 PSICSFVDLVFPCTLRRLS*APCLCRRNRPMFLVAPACPASPLRPRRDETPPPHHVELLN 418
PS ++P TL AP + P ++PA PA+P+ + PPP LL
Sbjct: 19 PSPAPSAPPLYP-TLSMADLAPVQIGPSSPSSPMSPASPATPVDAYAN-APPPSEDVLLR 76
Query: 417 MPFQQL 400
+P QL
Sbjct: 77 IPGAQL 82
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 703 ERNLCCCKNLFCSDCTTFVSFS--RLVSKGTSRST*N 599
+ N+ C KN C DC F RL+++G + S N
Sbjct: 202 QANILCSKNCKCQDCKNFEGSEELRLITQGDNSSDRN 238
>03_06_0288 + 32865414-32867249
Length = 611
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 477 SPLRPRRDETPPPHH 433
SPL P + + PPPHH
Sbjct: 11 SPLLPAKSKNPPPHH 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,404,319
Number of Sequences: 37544
Number of extensions: 421599
Number of successful extensions: 1274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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