Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D07
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9364| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.016
SB_46953| Best HMM Match : DUF1014 (HMM E-Value=0.83)                  32   0.47 
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)                     29   5.8  
SB_42230| Best HMM Match : PFK (HMM E-Value=0)                         28   7.6  

>SB_9364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 22/90 (24%), Positives = 42/90 (46%)
 Frame = +3

Query: 324 EELTKLVDGIYKNILDKFNPGARQMITXXXXXXXXXXXXXXXSRLYVDAVGKLGRQAQQG 503
           EEL   + G Y+NILD  +P  +++                 S  +  A+ KL + A   
Sbjct: 92  EELHSTICGTYQNILD-LSPVLKEVAAASKQYYKSLQNVSSSSLAFQQALAKLSQMASSS 150

Query: 504 TWGGCADIGTALMKVVEVYREIQDQQMNIL 593
             G    +G AL ++V  +R+++ ++ +I+
Sbjct: 151 K-GPAKPLGLALEEIVTTHRDVEARRADIV 179


>SB_46953| Best HMM Match : DUF1014 (HMM E-Value=0.83)
          Length = 284

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +3

Query: 522 DIGTALMKVVEVYREIQDQQMNILKAFYVDLLVPLETNLEKDTKVVQSEQKRFLQQHK 695
           DIG +L K+V  ++ I  Q   ++   Y  L+ PL++NL++  + V    +   +++K
Sbjct: 5   DIGQSLTKMVMRHKSIDGQLKALIGLLYDSLISPLQSNLDEWKRGVSQLDRDHAKEYK 62


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 231 RISTLTLRTHNSHFNAQYTRWYILVRFSNHSSKQTHF 121
           R S  TLRT N+    +Y+ + +L + + H+++ +H+
Sbjct: 349 RYSHYTLRTLNATHATRYSHYTLLTQHATHTTRYSHY 385


>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
          Length = 297

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 483 PASPLRPRRDETPPPHHVELLNMPFQQLSSAGHPD*TCPGY 361
           P + L P   + PPP+H   LN P  Q  S   P    P Y
Sbjct: 174 PLADLAPYPPDAPPPYHTVALNKPSLQPYSQMPPVEQTPPY 214


>SB_42230| Best HMM Match : PFK (HMM E-Value=0)
          Length = 1103

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 70  GRTLRSTDNILNKQMSSKVSLFA*VIREANEDIPPSILCIE 192
           G    + D IL+ +M ++ +L    + EA  D PP ++C+E
Sbjct: 880 GGNASAFDRILSCRMGAEAAL---AVLEAGRDTPPCVICLE 917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,919,573
Number of Sequences: 59808
Number of extensions: 504674
Number of successful extensions: 2038
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)