Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D03
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   0.89 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   2.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.3  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 105 ICLR*SNRPPTSKQHLSTHGFPNQNQTRHCYQSY 206
           IC +   RP T K HL TH      +   C +S+
Sbjct: 254 ICGKSYARPSTLKTHLRTHSGEKPYRCIDCNKSF 287


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 91  LAVSWIYFNRKWQPHNRFTNENRQYVH 11
           L+V   +    W P   F NE + Y H
Sbjct: 112 LSVGSEFIKNIWVPDTFFVNEKQSYFH 138


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 190  TATKVTWTSTVARK-FAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKA 336
            T T   WT+T  R+    + T+ +T +R  T      +  T GTT  P A
Sbjct: 1046 TTTSPWWTTTTTRRTTTTRPTTTSTTTRPTT-----TNWPTQGTTIPPPA 1090


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 126 RPPTSKQHLSTHGFPNQNQTRHCYQSY 206
           RP T K HL TH      +   C +S+
Sbjct: 5   RPSTLKTHLRTHSGEKPYRCIDCNKSF 31


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 347 TGEGAFGALVVPLVDPLIGAERP 279
           TG G   A ++P++  L+  + P
Sbjct: 204 TGSGKTAAFMLPIIHNLLSDKNP 226


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 366 VPDALIYFDLF 398
           VP  L+YFD+F
Sbjct: 223 VPRVLMYFDIF 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,365
Number of Sequences: 336
Number of extensions: 2398
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)