Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D03
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    95   5e-21
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.30 
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    29   0.40 
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.8  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.5  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.5  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 95.1 bits (226), Expect = 5e-21
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = +3

Query: 165 FPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 344
           FPN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++WD QR  GTF 
Sbjct: 21  FPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFP 80

Query: 345 GRI 353
             I
Sbjct: 81  API 83


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST      A NTS +  S      S P++ ST   TS P   S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405



 Score = 28.7 bits (61), Expect = 0.52
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST      A NTS    S      S P++ ST   TS P   S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169



 Score = 28.7 bits (61), Expect = 0.52
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST      A NTS    S      S P++ ST   TS P   S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST        NTS    S      S P++ ST   TS P   S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST        NTS    S      S P++ ST   TS P   S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541



 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST        NTS    S      S P++ ST   +S P   S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409



 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 190  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
            T++ V  TST        NTS    S      S P++ ST   +S P   S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 132 PTSKQHLSTHGFPNQNQTRHCYQS 203
           P SK+ +STHGFP+ N +   Y S
Sbjct: 400 PHSKEIMSTHGFPDNNLSIWSYSS 423


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 124 IARRPQNSTFRPTXSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSG 303
           ++ +P+ +      +L  +RR T+  +  T+T +    A NT+  T S      SA  S 
Sbjct: 478 LSEKPKTAPTGKQLALHPLRRETSI-LDSTNTTSTN--ATNTTTTTSSSSTASSSASASS 534

Query: 304 STSGTTSA 327
           STS T+ A
Sbjct: 535 STSATSGA 542


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
 Frame = +1

Query: 142 NSTFRPTXSLTKIRRGTATKVTWTSTVARKFAAKNTSHATI-----SRECTGLSAPMSGS 306
           +S+  PT + + I   +++  +++ST++    + ++S ++      S   +  S+P S S
Sbjct: 295 SSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354

Query: 307 TSGTTSAPKAPS 342
            S TTS+ K+ S
Sbjct: 355 FSSTTSSSKSSS 366


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 318 CPTCRPTHWGRETCTL 271
           CPT  PT W   +CT+
Sbjct: 3   CPTHGPTTWNPHSCTV 18


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = +1

Query: 190 TATKVTWTSTVARKFAAKNTSHATISREC-TGLSAPMSG--STSGTTSAPKAPSPV 348
           T T    T T  R  A  NTS+ + S     G SA  S    T   T A    SPV
Sbjct: 154 TTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAGTGASHRSSPV 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,451
Number of Sequences: 5004
Number of extensions: 36999
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)