Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_D03
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 87 6e-18
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 87 8e-18
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 66 1e-11
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 3e-09
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.69
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.69
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 30 1.2
04_04_0692 - 27307349-27307728,27308381-27308546 29 2.8
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 29 2.8
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 28 3.7
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 27 8.6
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 27 8.6
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 87.4 bits (207), Expect = 6e-18
Identities = 33/61 (54%), Positives = 41/61 (67%)
Frame = +3
Query: 165 FPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 344
FP NQTRHC+ YV++HRC +GE C F + YRSLCP EWV++W+ QR GTF
Sbjct: 107 FPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFP 166
Query: 345 G 347
G
Sbjct: 167 G 167
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 87.0 bits (206), Expect = 8e-18
Identities = 31/61 (50%), Positives = 42/61 (68%)
Frame = +3
Query: 165 FPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 344
FP NQTRHC+ Y+++HRC +GE C F + YRSLCP+EW+++W+ QR GTF
Sbjct: 193 FPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQRENGTFP 252
Query: 345 G 347
G
Sbjct: 253 G 253
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 66.5 bits (155), Expect = 1e-11
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +3
Query: 165 FPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 302
FP NQTRHC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 30 FPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 58.4 bits (135), Expect = 3e-09
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +3
Query: 222 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 347
C + +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.69
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 360 GSKSYRRRCLRRAGCPTCRPTHWGRET 280
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 232 FAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 342
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 187 GTATKVTWTSTVARKFAA------KNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 348
G A K T + ARK A K T+ A + + T +AP S + S +P+APSPV
Sbjct: 17 GPAPKATAPAGPARKAPAAAGPAPKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +1
Query: 169 LTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 342
L + GT T VT T + R F +T H + T A +SGS +G T K S
Sbjct: 83 LRSYKDGT-TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPSS 139
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 408 DLIKTNRNKLKHRERLGSKSYR 343
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 261 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 374
+F R ++ L PNEW++ ++ + +G + L++ D
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDD 916
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 127 ARRPQNSTFRPTXSLTKIRRGTATKVTWTSTVARKFAAKNTS-HATIS 267
ARRP S RP T +R T W T R + + HA +S
Sbjct: 510 ARRPSTSERRPVTRETALRHSNFTGSCWPLTPQRHISRGSAQIHADVS 557
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 8 PMNVLSILVCKAIVWLPF 61
P + SILV A+VWLPF
Sbjct: 23 PAEIGSILVSDALVWLPF 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,538
Number of Sequences: 37544
Number of extensions: 253026
Number of successful extensions: 803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -