Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D02
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    38   9e-04
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   6.5  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   6.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    24   8.6  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 81  STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 245
           ST+    F+R S+F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 22  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 24  SSFDEKSDFLEKIFKMSLWSTLNRTVF 104
           SSF+  +DFL + FK  L++ ++  +F
Sbjct: 6   SSFERGTDFLNRNFKKCLFACISIFIF 32


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 108 RTSTFALAVAGGTFFFERT 164
           R ST   A A GTFFF R+
Sbjct: 10  RCSTALSAAAAGTFFFRRS 28


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 9    VKRPVSSFDEKSDFLEKIF-KMSLWSTLNRTVFKRTSTFA 125
            + RP+ S DEK     KIF    + S +   +    S+FA
Sbjct: 1077 ILRPIPSIDEKKRIFNKIFITPKMESQIEHAIRTPVSSFA 1116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,231
Number of Sequences: 5004
Number of extensions: 18685
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)