Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D02
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z73906-11|CAD36485.1|  136|Caenorhabditis elegans Hypothetical p...    27   7.4  
U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450...    26   9.8  
U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 169 SNVLSKKKVPPATAKANVDVRLKTVRFNVDHRDILKIFSR--KSLFSSKLETGLLTN 5
           +NVLS      A  KA      +     V+H+DI ++FSR   +L++S  ET LL N
Sbjct: 146 ANVLSYTPRSEALQKAEKIFNDQMPSLPVEHKDIPQVFSRSPSNLYNSNNETPLLQN 202


>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 147 FFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQFIS*FINLIKI 296
           +F   T E +   +F NLN G ++K +   + +  V +QF + FIN++ +
Sbjct: 5   YFHPETCENIG--LFSNLNCGDIYKKLGLLFADINVCLQFFTVFINILHL 52


>Z73906-11|CAD36485.1|  136|Caenorhabditis elegans Hypothetical
           protein D2030.11 protein.
          Length = 136

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 9   VKRPVSSFDEKSDFLEKIFK 68
           V+R +S  DEKS+ L+KIF+
Sbjct: 57  VQRKMSKLDEKSEQLDKIFR 76


>U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 14A5 protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 30  FDEKSDFLEKIFKMSLWSTLNRTVFKRTSTFAL 128
           F+E S F    + M    TLN+TV +RT  F++
Sbjct: 402 FEENSKFNPDRYLMPDGKTLNKTVLERTIPFSV 434


>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 24  SSFDEKSDFLEKIFKMSLWSTLN 92
           SSF  KS F+E+IF MS  S+++
Sbjct: 148 SSFSSKSRFVEQIFGMSAVSSMS 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,205,503
Number of Sequences: 27780
Number of extensions: 101805
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)