Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D01
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BCJ1 Cluster: Chromosome undetermined scaffold_10, wh...    38   0.31 
UniRef50_A7I2H5 Cluster: Putative ankyrin repeat protein; n=1; C...    33   6.7  
UniRef50_Q54F71 Cluster: Putative uncharacterized protein; n=6; ...    33   6.7  

>UniRef50_A0BCJ1 Cluster: Chromosome undetermined scaffold_10, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_10,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 427

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 45  ELDL*KLN-FNFLIYHSYL*ITYTYFLFIIKCIDSVLMYNMSVCNHFDVRFF 197
           EL +  LN F FL++ +YL + +TYF+F  K     L  N  V NH  + F+
Sbjct: 204 ELLIYALNTFGFLVFSTYLLVLHTYFIFANKTTYEYLTINRFVINHHKLLFY 255


>UniRef50_A7I2H5 Cluster: Putative ankyrin repeat protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Putative ankyrin
           repeat protein - Campylobacter hominis (strain ATCC
           BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 491

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 552 QDSRNFAIYYIDNNSQVKVIGVVIEYKHLLQNSSAN 445
           +D+R FA +Y + N ++++IG++  YK+    +S N
Sbjct: 437 KDTREFATFYNERNKRLEIIGLLYSYKNCDDKNSPN 472


>UniRef50_Q54F71 Cluster: Putative uncharacterized protein; n=6;
            cellular organisms|Rep: Putative uncharacterized protein
            - Dictyostelium discoideum AX4
          Length = 2441

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 337  YSD*KPI-C-DGTNNFVDHHTSKRFCSGSKTSSR*LSCIS 450
            Y    PI C DG N +  +H S  FCS S+T S  + C+S
Sbjct: 2287 YGQNSPIYCKDGFNEYTYNHNSTIFCSNSETQSNIVECVS 2326


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,640,733
Number of Sequences: 1657284
Number of extensions: 10460694
Number of successful extensions: 20238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20235
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)