Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D01
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    27   3.4  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   7.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   7.8  

>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 419 KQAVVSSHVLAEEFCSRCLYSITTPMTLTCELLSI*YIAKFLLSCILSANTTA 577
           + A+ + H+ A +  +R L S   PM+      SI +    L++CI+ A T++
Sbjct: 75  RHALDADHITAIDNLTRRLLSTDKPMSTVGTWFSIGHSTVVLITCIVVAATSS 127


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 497 TLTCELLSI*YIAKFLLSCILSANTTATG 583
           T TC  L++ Y  + L SC+++A+T   G
Sbjct: 115 TTTCSKLALHYQRRGLKSCLVAADTFRAG 143


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 1    RPADEYLYNFTAEVLNW 51
            RP  E+ +N+T+E ++W
Sbjct: 1973 RPVSEFKFNWTSEAISW 1989


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 552 QDSRNFAIYYIDNNSQVKVI--GVVIEY 475
           +D +N  + +ID NS+   I  GVV++Y
Sbjct: 604 EDPQNSIVIFIDENSEASTISKGVVLKY 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,463
Number of Sequences: 5004
Number of extensions: 50460
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)