Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D01
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171...    29   3.5  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    28   6.2  

>08_01_0214 -
           1710317-1710443,1710839-1711047,1711161-1711420,
           1711442-1711534,1711745-1711872,1711958-1712151,
           1712288-1712385,1712548-1712658,1712782-1712950,
           1713109-1713181,1713311-1713507
          Length = 552

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -1

Query: 346 NHCN---LSRFKVPTLYFKNSKIYP 281
           +HC    LSRFKVP +Y++ SK +P
Sbjct: 502 DHCRTNKLSRFKVPRIYYQWSKPFP 526


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -2

Query: 594  RFYDPVAVVLADNMQDSRNFAIYYIDNN----SQVKVIGVVIEYKHLLQNSSAN 445
            R YD   VV + ++ DS +    Y+D N     +V  I V    KHLLQ +  N
Sbjct: 1233 RIYDLKGVVFSRHVSDSNDHGTVYLDQNFVDDMRVSPIYVGGRTKHLLQRAIWN 1286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,244
Number of Sequences: 37544
Number of extensions: 237652
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)