Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_D01
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17974| Best HMM Match : PAN (HMM E-Value=0.004)                     31   1.2  
SB_56808| Best HMM Match : EGF (HMM E-Value=0.00024)                   31   1.2  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)                 28   8.3  
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_17974| Best HMM Match : PAN (HMM E-Value=0.004)
          Length = 318

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 359 VTELTTLLIITHQKGFVQDQKQAVVSSHVLAEEFCSRCLYSITTPMTLTCEL 514
           +T++  +L   H K  +Q Q Q   S   L +++C    Y ++ P    CEL
Sbjct: 36  ITQVGLVLRSRHAKKRLQAQSQISCSQRCLQQDWCISVNYEVSRPEAGACEL 87


>SB_56808| Best HMM Match : EGF (HMM E-Value=0.00024)
          Length = 164

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 359 VTELTTLLIITHQKGFVQDQKQAVVSSHVLAEEFCSRCLYSITTPMTLTCEL 514
           +T++  +L   H K  +Q Q Q   S   L +++C    Y ++ P    CEL
Sbjct: 36  ITQVNLVLRSKHVKKRLQGQSQMSCSQRCLQQDWCISVNYEVSRPEGGACEL 87


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 359 VTELTTLLIITHQKGFVQDQKQAVVSSHVLAEEFCSRCLYSITTPMTLTCEL 514
           +T++   L   H K  +Q Q Q   S   L +++C    Y ++ P    CEL
Sbjct: 377 ITQVDLALRSKHVKKRLQGQSQMSCSQRCLQQDWCISVNYEVSRPEGGACEL 428


>SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 359 VTELTTLLIITHQKGFVQDQKQAVVSSHVLAEEFCSRCLYSITTPMTLTCEL 514
           +T++   L   H K  +Q Q Q   S   L +++C    Y ++ P    CEL
Sbjct: 36  ITQVDLALQSKHVKKRLQGQSQMSCSQRCLQQDWCISVNYEVSRPEGGACEL 87


>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
          Length = 306

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 63  LNFNFLIYHSYL*ITYTYFLFIIKCIDSVL 152
           L+F+FL Y+ Y+ +T  Y  F   CI+ V+
Sbjct: 223 LSFDFLFYNYYVEMTLLYLQFSNSCINIVV 252


>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 990

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 334 LSRFKVPTLYFKNSKI 287
           LS FK+P LYF NS+I
Sbjct: 481 LSLFKIPQLYFSNSRI 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,933
Number of Sequences: 59808
Number of extensions: 319603
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)