Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C23
         (439 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NJ76 Cluster: Putative sugar ABC transport system mem...    33   3.5  
UniRef50_A6EU24 Cluster: Possible gliding motility-related prote...    32   4.7  

>UniRef50_Q6NJ76 Cluster: Putative sugar ABC transport system
           membrane protein; n=1; Corynebacterium diphtheriae|Rep:
           Putative sugar ABC transport system membrane protein -
           Corynebacterium diphtheriae
          Length = 292

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 16  LVCFTCVLGLIVVLIVEYIIFKVYLRFFYTY 108
           + CFTCV+ ++ VL V Y + ++  RF   Y
Sbjct: 89  IACFTCVISVVFVLFVSYSLSRLRFRFRKVY 119


>UniRef50_A6EU24 Cluster: Possible gliding motility-related protein;
           possible serine kinase; n=2; Bacteroidetes|Rep: Possible
           gliding motility-related protein; possible serine kinase
           - unidentified eubacterium SCB49
          Length = 586

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 283 LSNYIFIFTCIRYIFAINKILFYINMGRKTQFK 185
           LSNYI I T +R+IF +   L ++N  +K  +K
Sbjct: 19  LSNYISINTVLRFIFTVIISLSFVNCSKKDNYK 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,456,492
Number of Sequences: 1657284
Number of extensions: 5062061
Number of successful extensions: 10788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10783
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)