Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C23
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    26   2.2  
SPBC713.08 |tom13||mitochondrial TOM complex subunit Tom13|Schiz...    25   6.7  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 27  YLCFGINCGV-NCRIYYF*SISPVFLYI 107
           ++ +G+  GV N  +YYF +  P  LY+
Sbjct: 227 FIAYGLGLGVTNFALYYFKAAQPALLYL 254


>SPBC713.08 |tom13||mitochondrial TOM complex subunit
           Tom13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 71

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 203 QKNTI*IYKNLKTSLLNIFKISTSALVLP 117
           +KNT+ + K L + +++IFK +   L LP
Sbjct: 2   EKNTVTVPKTLFSQVIHIFKYAAINLGLP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,566
Number of Sequences: 5004
Number of extensions: 23615
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)