Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C23
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    31   0.48 
Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z74472-3|CAA98941.2|  183|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
 Frame = -1

Query: 283 LSNYIFIFTCIRYIFAINKILFYINMGRKTQFKSI--------KILKRLS*TFLKLALRP 128
           +S+ IFI  C   +F   ++L+ I+  RK  FKS          I   L   +++L  RP
Sbjct: 12  ISHLIFIPICWFSVFLYLRVLYIIHQLRKNVFKSSFFLIIRMHAITDLLMFLYVELVARP 71

Query: 127 LSYRRCNMYKKTGD 86
             YR  N+++   D
Sbjct: 72  RKYRVHNLFEAAND 85


>Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.6 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 10  DKLVCFTCVLGLIVVLIVEYIIFKVYLRFFYTYCTFGKTRAEVLILKMF 156
           DK +   CV GL+ V +   +IF V+   +Y Y T  +++A   + K F
Sbjct: 190 DKTLTCWCV-GLMFVFLFPQVIFFVFQISWYLYHTVSQSQATNRLQKQF 237


>Z74472-3|CAA98941.2|  183|Caenorhabditis elegans Hypothetical
           protein F23H12.3 protein.
          Length = 183

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 253 IRYIFAINKILFYINMGRKTQFKSI 179
           ++++  IN+ L+++NM +   FKS+
Sbjct: 146 VKFVLDINRDLYFLNMSKSYMFKSM 170


>Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical
           protein C31A11.3 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 19  VCFTCVLGLIVVLIVEYIIFKVYLRFFYTYCTFGKTRAEVLILKMFRRDV 168
           +C + V   I +  V+YII  +    F+   +FG  RA V +     R V
Sbjct: 59  ICISRVYIPITMTFVDYIIKNMSFYLFWASTSFGSLRAVVALAISLERAV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,715,097
Number of Sequences: 27780
Number of extensions: 130693
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)