Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C22
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 36 0.046
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 33 0.19
09_02_0210 + 5812428-5812468,5812633-5812895,5814064-5814214,581... 32 0.43
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 31 0.99
02_01_0019 + 124871-124893,125030-125128,125379-125456,125850-12... 30 1.7
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 30 2.3
01_06_0082 + 26279699-26279996,26280100-26280315,26280438-262808... 30 2.3
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 29 3.0
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506... 28 7.0
08_02_1525 + 27661094-27661801 28 7.0
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 28 9.2
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 35.5 bits (78), Expect = 0.046
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 374 VREPDEVKEHGHIPNSINIPLGTISTVLGEM-SDKEFNKTYKRPKPNQNTELIFYCMVGR 550
V EP + GH+P S +P + ++ +E K +++ + + L+ C G
Sbjct: 322 VPEPRKGIRSGHVPGSKCVPFPQLLDSSQKLLPPEELRKRFEQEGISLDQPLVSSCGTGV 381
Query: 551 RSAKAQESAINLGFKNTKNYQGSWTEWAS 637
+ LG + Y GSWTEW +
Sbjct: 382 TACILALGLHRLGKTDVPVYDGSWTEWGA 410
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +2
Query: 380 EPDEVKEHGHIPNSINIP-LGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMVGRRS 556
EP E GHIP + +P L + E K +++ + + ++ C G +
Sbjct: 568 EPREGVRSGHIPGTKCVPFLEMFDDAPMLLPADEIRKKFEQAGISLDRPIVVTCGSGVTA 627
Query: 557 AKAQESAINLGFKNTKNYQGSWTEW 631
+G ++ Y GSWTEW
Sbjct: 628 CILALGLYRIGKQDIPVYDGSWTEW 652
>09_02_0210 +
5812428-5812468,5812633-5812895,5814064-5814214,
5814678-5814763,5815182-5815286,5815444-5815504,
5816078-5816087
Length = 238
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 299 KVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNSINIPL 436
+ E D DE + ++ ++D+R+ + +E HI NS ++PL
Sbjct: 48 RAEVSFVDGDEAKRLVAEEGYTVLDIRDRTQ-RERAHIKNSAHVPL 92
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 296 SKVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNSINIPLGTISTVLGEMSDK 475
+++ T + YDE ++ N L +D+ D EHG+ I +P T + G++S
Sbjct: 435 ARLLTGCSSYDEFLELSQRGNNLAVDLTVGDIYGEHGY--PKIGLPASTTAASFGKVSSS 492
Query: 476 EFNKTYK 496
++ YK
Sbjct: 493 RLSE-YK 498
>02_01_0019 +
124871-124893,125030-125128,125379-125456,125850-125920,
126816-126940
Length = 131
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 290 SESKVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNSINIP 433
SES V D I++ +DVR +E+ + GH+ NS+N+P
Sbjct: 12 SESPVPVVTVDVAAASDLITSAGHRYVDVRTEEEMNK-GHLHNSLNVP 58
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 29.9 bits (64), Expect = 2.3
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 4/142 (2%)
Frame = +2
Query: 110 NVIVLLLVMFRCGRRITQLIIRKSRTTSAGYLKLNYARKQLSSNEYKAIPQSNALSLRLY 289
N +++ V+ R G I ++ RT Y L +L N I Q + +
Sbjct: 898 NSVLMFNVLSRKGADIASKASKRKRT----YDYLVDELDKLEKNIDLMIQQEDQTQFSQH 953
Query: 290 SESKVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNS----INIPLGTISTVL 457
+S +E A+ E K + +I +PD G P + + + +
Sbjct: 954 QDSGIEIANAEQQEQEKDVQEEHI-----EDPDTANTKGRKPKRYRRIVEKIIESSKKKI 1008
Query: 458 GEMSDKEFNKTYKRPKPNQNTE 523
E D E N+ RPK N N E
Sbjct: 1009 EEQEDAEENQNKARPKRNNNEE 1030
>01_06_0082 +
26279699-26279996,26280100-26280315,26280438-26280863,
26280966-26281168
Length = 380
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 434 LGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMVGRRSAKAQESAINLGFK 595
LG V+GE+ ++N + +P + ++GR A QE INLG K
Sbjct: 178 LGESLIVMGEIGGNDYNFWFTARQPRETARQYLPDVIGRIGAAVQE-VINLGAK 230
>07_03_1741 +
29156076-29156316,29156554-29156676,29156784-29156875,
29157577-29157677,29157752-29157862,29158254-29158362,
29158589-29158639,29158758-29158838
Length = 302
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/92 (30%), Positives = 42/92 (45%)
Frame = +2
Query: 365 LIDVREPDEVKEHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMV 544
LIDVREPDEV + + +PL T G + EF+ P ++T ++ C
Sbjct: 214 LIDVREPDEV-DKASLEGFKVLPLRQFGT-WGPVMTDEFD-------PQKDTYVL--CHH 262
Query: 545 GRRSAKAQESAINLGFKNTKNYQGSWTEWASK 640
G RS + + + GF+ N G +A K
Sbjct: 263 GMRSMQVAKWLQSQGFRKVYNVAGGIHAYAVK 294
>09_06_0043 +
20448793-20449823,20449915-20450030,20450491-20450661,
20450761-20450807,20451090-20451182,20451571-20451709,
20452028-20452130,20452749-20452866
Length = 605
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 302 VETKVADYD--EVVKAISNNNILLIDVREPDEVKEHGHIPNSINIPL 436
VE +V D E ++ NN ++DVR + KE H P ++N+ +
Sbjct: 452 VEKRVRSVDVKEALRLQKENNFAILDVRPVADFKE-AHPPGAVNVQI 497
>08_02_1525 + 27661094-27661801
Length = 235
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/88 (26%), Positives = 44/88 (50%)
Frame = +2
Query: 77 IKAYFNLYTSLNVIVLLLVMFRCGRRITQLIIRKSRTTSAGYLKLNYARKQLSSNEYKAI 256
+++ ++Y+++ I+ L C + +L+ R+ S L L ++ + E KAI
Sbjct: 43 LRSLVDIYSTIEKIMCLPSNQVCSSQQRKLLDREMEC-SLELLDLCNGMNEVFT-ELKAI 100
Query: 257 PQSNALSLRLYSESKVETKVADYDEVVK 340
Q +SLR + V+TK+ Y +VK
Sbjct: 101 IQDLQVSLRKGDNAAVQTKIQSYIRLVK 128
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 703 LSCHFKINMRF*HSFQNKSFSFTRPFSPAALIILC 599
L HF ++ R F+ K+ SF RP AA ++C
Sbjct: 208 LYSHFSVSKRRTEFFRKKAESFCRPVRGAAPFVVC 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,087
Number of Sequences: 37544
Number of extensions: 256512
Number of successful extensions: 512
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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