Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C22
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81592-13|CAB76412.2| 421|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z78016-9|CAB76723.2| 421|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z68216-2|CAA92460.2| 367|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z77657-2|CAB01146.1| 147|Caenorhabditis elegans Hypothetical pr... 28 8.2
U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protei... 28 8.2
>Z81592-13|CAB76412.2| 421|Caenorhabditis elegans Hypothetical
protein R186.6 protein.
Length = 421
Score = 43.2 bits (97), Expect = 2e-04
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Frame = +2
Query: 173 RKSRTTSAGYLKLNYARKQLSSNEYKAIPQSNALSLRL--YSESKVETKVADYDEVVKAI 346
+K S GYL + Q S +YK R + S ++ + YD+V+
Sbjct: 245 QKVSLLSGGYL--GWKTHQARSGQYKTEQGDAPRKPRQGDFLASWNDSVIITYDDVLLNS 302
Query: 347 SNNNILLIDVREPDEVKE------HGHIPNSINIPLGTI-STVLGEMSDKEFNK-TYKRP 502
+N ++D + DE +GHI + NIP+ + +G+ D + K +
Sbjct: 303 EIDNFDVVDAQTKDEFLGTAQGALYGHIKGARNIPVDAVYDWAVGQWKDADHLKGLFNNN 362
Query: 503 KPNQNTELIFYCMVGRRSAKAQESAINLGFKNTKNYQGSWTEW 631
+ +I YC RSA + G+ N K Y G W EW
Sbjct: 363 ALSLRKPVIIYCSTSLRSAMVWWALTRSGY-NGKIYFGGWPEW 404
>Z78016-9|CAB76723.2| 421|Caenorhabditis elegans Hypothetical
protein R186.6 protein.
Length = 421
Score = 43.2 bits (97), Expect = 2e-04
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Frame = +2
Query: 173 RKSRTTSAGYLKLNYARKQLSSNEYKAIPQSNALSLRL--YSESKVETKVADYDEVVKAI 346
+K S GYL + Q S +YK R + S ++ + YD+V+
Sbjct: 245 QKVSLLSGGYL--GWKTHQARSGQYKTEQGDAPRKPRQGDFLASWNDSVIITYDDVLLNS 302
Query: 347 SNNNILLIDVREPDEVKE------HGHIPNSINIPLGTI-STVLGEMSDKEFNK-TYKRP 502
+N ++D + DE +GHI + NIP+ + +G+ D + K +
Sbjct: 303 EIDNFDVVDAQTKDEFLGTAQGALYGHIKGARNIPVDAVYDWAVGQWKDADHLKGLFNNN 362
Query: 503 KPNQNTELIFYCMVGRRSAKAQESAINLGFKNTKNYQGSWTEW 631
+ +I YC RSA + G+ N K Y G W EW
Sbjct: 363 ALSLRKPVIIYCSTSLRSAMVWWALTRSGY-NGKIYFGGWPEW 404
>U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical
protein R08E3.4a protein.
Length = 447
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 233 SSNEYKAIPQSNALSLRLYSESKVET-KVADYDEVVKAISNNNILL 367
S +E P +N SL L + K T + D + VV I+NNN+LL
Sbjct: 386 SPSEQSHSPPANESSLSLTEKEKSPTPEKEDEENVVCVIANNNLLL 431
>Z68216-2|CAA92460.2| 367|Caenorhabditis elegans Hypothetical
protein F27C8.2 protein.
Length = 367
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 329 EVVKAISNNNILLIDVREPDEVK-EHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPK 505
++V A N + + E++ E GHIP+ + PL ST + E+ ++ K + P+
Sbjct: 245 QIVAAFDENTGSCVGISILREIQNEDGHIPDLLIAPLHAKSTAIAEILLQKSLKKHYNPE 304
Query: 506 PNQNTELIFYCMVGRRS 556
+ + + + + + RRS
Sbjct: 305 DDYDFD-VDHLAIYRRS 320
>Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical
protein F11A6.1a protein.
Length = 692
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 224 KQLSSNEYKAIPQSNALSLRLYSE----SKVETKVADYDEVVKAI 346
+Q + YK IP N L L+LYS+ E KV+ Y E V+AI
Sbjct: 519 RQFYPSRYKNIPNGNRLQLQLYSDGCYGGADENKVS-YVEHVQAI 562
>Z77657-2|CAB01146.1| 147|Caenorhabditis elegans Hypothetical
protein F08H9.3 protein.
Length = 147
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 203 LKLNYARKQLSSN-EYKAIPQSNALSLRLYSESKVETKVADYDEVVKAISNNNILLIDVR 379
LK+N ++LS E++ I N + + YS+S V + D + +S + LLI+V
Sbjct: 65 LKINLEGRKLSIKAEHQEIENDNISTTQTYSKSIVLPEDVDVTHLSSNLSEDGKLLIEVP 124
Query: 380 EPDEVK 397
+ + K
Sbjct: 125 KVEAKK 130
>U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protein
protein.
Length = 692
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 224 KQLSSNEYKAIPQSNALSLRLYSE----SKVETKVADYDEVVKAI 346
+Q + YK IP N L L+LYS+ E KV+ Y E V+AI
Sbjct: 519 RQFYPSRYKNIPNGNRLQLQLYSDGCYGGADENKVS-YVEHVQAI 562
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,822
Number of Sequences: 27780
Number of extensions: 268212
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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