Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C21
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    41   2e-04
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.2  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   5.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   5.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   7.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.7  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +2

Query: 176 LSPHLHTD---ECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLD 346
           + PHL  +   +C   I+ L +CH +  F KF G CN    +++ CL  +R  + + N +
Sbjct: 1   MHPHLDVNNQKQCADLIRALEECHKS--FGKFFGECNTIKYELKACLTKDRNDKARLNRE 58

Query: 347 ESRQR 361
            +R R
Sbjct: 59  NARMR 63


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 608  NNAIRFE*NIIIISLFFMPSTLIKYR--FEKYLSVKVFKLSKSGIESKMLKSIVFIITKL 435
            N A+RF+ ++I I   F+PS  ++    + K L  K +K  K G+  K L S+   I ++
Sbjct: 1077 NMALRFQRDLIEIFELFVPSVTLRNNPSYIKELKEKEYKRLK-GVIEKCLSSVASRINQI 1135


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 57  LGNYITESYNCIISSRIKLVLNNIVYYK 140
           LGNY   S N + S   KL L++IV YK
Sbjct: 111 LGNYSPYSRNLLYSIAEKLGLSSIVVYK 138


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 215 IKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQK 334
           ++  +D  ++HP+ K  GY +   RD R   KAE   R++
Sbjct: 266 LRPSIDQIISHPYFKENGYHSSSIRDPRPSSKAEEKVRKR 305


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +2

Query: 41  LRQILIRELYNRKL-QLHNFFKN*ISIK*YCLL*SIIKLI*VMHTDLSPHLHTDECNIFI 217
           LR  +I  L N  + Q+H+  +N +S      + S++ L+     D+SP+  T   ++FI
Sbjct: 323 LRCAIIEVLANVVIDQIHDEAQNEMSESVPATVQSLMDLLSERLLDISPYCRTKVLHVFI 382

Query: 218 KKLVDCHLNHPFRK 259
            K+ D  + +P ++
Sbjct: 383 -KIFDLPIKYPRKR 395


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 281 YDRDMRKCLKAERLQRQKANL 343
           YDR +R C+KA   Q+Q+ ++
Sbjct: 718 YDRLIRNCIKAHNKQQQRRSI 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,397
Number of Sequences: 5004
Number of extensions: 55322
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)