Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C21
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.36 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.9  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 227 VDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQR 328
           +D  L    RK I  C D  ++  KCL A++  R
Sbjct: 86  MDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSR 119


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 172  GFVTPFTHR 198
            GFVTPF HR
Sbjct: 981  GFVTPFEHR 989


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 IKYNKTYLSYAHGFVTPFTHR 198
           I  N   LS A  F+TPF +R
Sbjct: 256 ISRNGVRLSSARAFITPFENR 276


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -3

Query: 527 EKYLSVKVFK----LSKSGIESKML-KSIVFIITKLCFLI*IYISWLLRSGLKFVLEY*R 363
           ++  ++K+ K    +    +E  M+ K ++ + TK  FL+ ++  +     L FV+EY  
Sbjct: 9   DELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVN 68

Query: 362 G 360
           G
Sbjct: 69  G 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,015
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)