Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C19
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   6.7  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   8.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 574 IQIQCIYYCKCHLGFL 527
           +Q+   Y+C C LGF+
Sbjct: 316 VQLVNDYHCNCKLGFM 331


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 472 MFPFKR*RQDRWQ 434
           +FPF R  Q RWQ
Sbjct: 173 LFPFYRQNQQRWQ 185


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/33 (27%), Positives = 12/33 (36%)
 Frame = +1

Query: 148 MASIXCRPNSAWKARXCFX*SKKSSRHTC*N*G 246
           +A   C   + WK + C          TC N G
Sbjct: 125 IADFECNCKNGWKGKTCSLKDSHCDHTTCKNGG 157


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 495 LTVYLT*PCSPSKDEGRTGGNVQVK 421
           LT Y T   SPS  E   GG   V+
Sbjct: 1   LTPYFTQSTSPSASEAFPGGRTLVE 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,089
Number of Sequences: 336
Number of extensions: 4917
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)