Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C18
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 46 4e-06
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 45 1e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 36 0.003
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 31 0.13
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 28 1.2
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 1.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 3.7
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 8.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 25 8.5
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 8.5
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.0 bits (104), Expect = 4e-06
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 139 CPKCGKSVYAAEXRVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 309
C CG S+ A A G K H CFKC C + L+ EG+ YC + + +F
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQF 314
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 136 KCPKCGKSVYAAEXRVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 300
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 139 CPKCGKSVYAAEXRVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 294
C KC +SV + GG WH CFKC C K LD ++ + + +++CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 139 CPKCGKSVYAAEXRVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 294
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 33.1 bits (72), Expect = 0.032
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +1
Query: 133 PKCPKCGKSVYAAEXRV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 294
P C C + A R+ +G +H+ CF+C C+K + +N ++C C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 139 CPKCGKSVYAAEXRVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYCKVCH 297
C CG A + ++ W K C CGL + + CSE G C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +1
Query: 106 TMPFKPADXPKCPKCGKSVYAAEXRVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYC 285
T+P P+C CG++ + A G + C+ C Q ++ C+E + E C
Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60
Query: 286 KVC 294
C
Sbjct: 61 YAC 63
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 196 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 297
K+H C CG C+ +S E+ ++CK C+
Sbjct: 65 KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 248 ESSNFWHRPHLKHILCHLRPP 186
E+SN++ P L+H LCH PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 293 HTLQYSSPSCSEQLVESSNFWHRPHLKHIL 204
HT + PSCS Q PH K ++
Sbjct: 253 HTFHATCPSCSHQCDTHMKLLDIPHFKEVI 282
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 40 LSTRPGRSPL--VPPRPHRLSXARTMPFKPADXPKCP 144
+ST P +PL VPP P S A +P AD P P
Sbjct: 1000 VSTSPA-APLARVPPVPKLSSKAPPVPLPSADAPPIP 1035
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 488 KVQYGVRSRSTTGWPRCVSAIRN 420
K+Q + ++T WP+C+ I N
Sbjct: 32 KLQQAIHQFTSTCWPKCIGNIGN 54
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -2
Query: 482 QYGVRSRSTTGWPRCVSAIRNFC 414
+YG+++ + W +C IR +C
Sbjct: 50 KYGIQTGFSKYWKKCTYGIREYC 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,482
Number of Sequences: 5004
Number of extensions: 35816
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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