Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C16
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 37 0.004
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 36 0.006
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 33 0.044
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 33 0.058
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 32 0.077
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.13
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 31 0.18
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 31 0.18
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.18
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 31 0.24
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 30 0.31
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.31
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.54
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 28 1.3
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 1.7
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.2
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 2.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 2.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 27 2.9
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.1
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 5.1
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 5.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 5.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 6.7
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 8.9
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 25 8.9
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 25 8.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 8.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.7 bits (81), Expect = 0.004
Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Frame = +3
Query: 84 GKIMFPNQQFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQP-GY 260
G + QQ G+N + PQ+ +NT MQ + +PG P P PQP G+
Sbjct: 83 GSVADYGQQQQQMYGYNGMMPQTMNNTGFMQ---PQQTGAIPGFA-PQPTGFVQPQPTGF 138
Query: 261 PIQQNQGY--PQSTAQ----YPTQGVPYPTHQSQ----GYPQSTAQYPTQGVPYPNHQSQ 410
QQ + PQ T P + P +Q Q PQ T + Q + Q
Sbjct: 139 MSQQPASFMQPQRTGGAGFIQPQRTGAMPAYQPQMNNFMQPQKTGGFAPQATGFMQTQPF 198
Query: 411 GYPQSTAQYPTQGF 452
G S A PT GF
Sbjct: 199 GAAPSFAPQPT-GF 211
Score = 32.7 bits (71), Expect = 0.058
Identities = 34/116 (29%), Positives = 39/116 (33%), Gaps = 3/116 (2%)
Frame = +3
Query: 114 PPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQS 293
P G + PQ M M+ PQ+PG P+ Q QP P Q+ PQ
Sbjct: 665 PQRTGMQPMAPQRTGMQPMMPQRTGMQ-PQMPGMQQPMAPQRTGMQPMMP-QRTGMQPQM 722
Query: 294 TA-QYPTQGVPYPTHQSQGYPQSTAQYP--TQGVPYPNHQSQGYPQSTAQYPTQGF 452
Q P P T PQ T P T G P PQ T GF
Sbjct: 723 PGMQQPM--APQRTGMQPMAPQRTGMQPQMTGGPMLPQRTGGMAPQPTGMPGQWGF 776
Score = 31.5 bits (68), Expect = 0.13
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Frame = +3
Query: 198 PQVPGQGYPLPAQSAYPQPGYPIQQ------NQGYPQ---STAQYPTQGVPYPTHQSQGY 350
P+ PG PA S+ P P P+ Q N P S AQ P V T S
Sbjct: 1460 PKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTL 1519
Query: 351 PQSTAQY---PTQGVPYPNHQS 407
P S + + P+ P P H S
Sbjct: 1520 PPSQSSFAHVPSPAPPAPQHPS 1541
Score = 27.9 bits (59), Expect = 1.7
Identities = 32/110 (29%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Frame = +3
Query: 114 PPNVGFNN-LTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQ 290
P GF + PQ M M+ PQ+PG P+ Q QP P Q G Q
Sbjct: 549 PQMTGFQQPMAPQRTGMQPMMPQRTGMQ-PQMPGMQQPMAPQRTGMQPMMP--QRTGMQQ 605
Query: 291 STAQYPTQGVPYPTHQSQGYPQSTAQYPTQGVPYPNHQSQGYPQSTAQYP 440
A P T PQ T P P Q PQ T P
Sbjct: 606 PMA-------PQRTGMQPMMPQRTGMQPQM----PGMQQPMAPQRTGMQP 644
Score = 25.4 bits (53), Expect = 8.9
Identities = 27/91 (29%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Frame = +3
Query: 198 PQVPGQGYPLPAQ--SAYP--------QPGYPIQQNQGYPQSTAQYPTQGVPYPTHQSQG 347
PQ+PG P+ Q P QP P Q PQ T P P T
Sbjct: 626 PQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPM--APQRTGMQPM 683
Query: 348 YPQSTAQYPTQGVPYPNHQSQGYPQSTAQYP 440
PQ T P P Q PQ T P
Sbjct: 684 MPQRTGMQPQM----PGMQQPMAPQRTGMQP 710
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 35.9 bits (79), Expect = 0.006
Identities = 26/92 (28%), Positives = 32/92 (34%)
Frame = +3
Query: 144 PQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVP 323
P S ++ G P + A SA P P QN+ Y + YP QG
Sbjct: 50 PPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQG-- 107
Query: 324 YPTHQSQGYPQSTAQYPTQGVPYPNHQSQGYP 419
GYPQ YP Q YP + P
Sbjct: 108 -------GYPQQPYYYPNQPNYYPAQPAYAQP 132
Score = 29.5 bits (63), Expect = 0.54
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Frame = +3
Query: 222 PLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVPYPT---HQSQGYPQSTAQYPTQGVPY 392
P SA P P N P + A + P P Q++ Y + YP QG
Sbjct: 51 PSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQG--- 107
Query: 393 PNHQSQGYPQSTAQYPTQ 446
GYPQ YP Q
Sbjct: 108 ------GYPQQPYYYPNQ 119
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 33.1 bits (72), Expect = 0.044
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +3
Query: 210 GQGYPLPAQSA-YPQPGYPIQQNQGYPQSTAQY-PTQGVPYPTHQSQGYPQSTAQYPTQ- 380
GQ PAQ Y Q P+Q Q QST + P Q + P +Q Y S+ P Q
Sbjct: 356 GQNNNQPAQPGQYNQQSQPVQSYQS-GQSTQHFQPVQPI-QPVQSTQYYQPSSPVQPVQN 413
Query: 381 GVPYPNHQ----SQGYPQSTAQYPTQ 446
GVP P Q +Q Y S+ P Q
Sbjct: 414 GVPAPPMQPVQSTQYYQPSSPVQPVQ 439
Score = 31.1 bits (67), Expect = 0.18
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +3
Query: 120 NVGFNNLTPQSFSNTMNMQGSPAMRNPQV-PGQGYPLPAQSAYPQPGYPI---QQNQGYP 287
N+G + + +S N N P N Q P Q Y + + QP PI Q Q Y
Sbjct: 346 NIG-SRVVSRSGQNN-NQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQ 403
Query: 288 QSTAQYPTQ-GVPYPTHQ----SQGYPQSTAQYPTQGV 386
S+ P Q GVP P Q +Q Y S+ P Q V
Sbjct: 404 PSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNV 441
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 102 NQQFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPL-PAQSAYPQPGY-PIQQN 275
NQQ P + + QS + +Q +++ Q P+ P Q+ P P P+Q
Sbjct: 369 NQQSQPVQSYQS--GQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQST 426
Query: 276 QGYPQSTAQYPTQGV 320
Q Y S+ P Q V
Sbjct: 427 QYYQPSSPVQPVQNV 441
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 32.7 bits (71), Expect = 0.058
Identities = 32/123 (26%), Positives = 42/123 (34%), Gaps = 7/123 (5%)
Frame = +3
Query: 96 FPNQQFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPG--QGYPLPAQSAYPQPGYPIQ 269
+P Q P+ N+ P P VP P P ++YP P
Sbjct: 685 YPRQNGYPSYSDGNVYPHDRVMINYGSSMPTANGFYVPNTYSPVPFPYNTSYPPYMSPTS 744
Query: 270 QNQGYPQSTAQYPTQGVPYP-THQSQGYPQSTAQY----PTQGVPYPNHQSQGYPQSTAQ 434
Q+ +QYP Q P+P + Q P S G+PYP Q A
Sbjct: 745 NMPQAFQAYSQYPYQHPPFPLSEQMLPLPTSGVMMAPGAAKSGMPYPFIQPPSMTNQVA- 803
Query: 435 YPT 443
YPT
Sbjct: 804 YPT 806
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 32.3 bits (70), Expect = 0.077
Identities = 25/68 (36%), Positives = 28/68 (41%)
Frame = +3
Query: 105 QQFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGY 284
QQF + G+ PQ N P +N P QGY P YPQ GYP QQ
Sbjct: 4 QQFYGDKGYAPAPPQQAYGGPNYY--PPQQN--YPQQGYAPP--QGYPQGGYPAQQPMYV 57
Query: 285 PQSTAQYP 308
Q A P
Sbjct: 58 QQPQASDP 65
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.5 bits (68), Expect = 0.13
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +3
Query: 87 KIMFPNQ--QFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGY 260
+++ P Q Q PPN+ PQ M P + + Q P Q PLP Q A P
Sbjct: 109 QVLQPQQYRQLPPNMVAATNAPQQHPQLQRMM--PILSSNQ-PIQQLPLPNQ-ASPYIPV 164
Query: 261 PIQQNQGYPQSTAQYPTQGVPYPTHQSQGYPQSTAQYPTQ 380
P+QQ Q QS Q Q + Q PQ Q Q
Sbjct: 165 PLQQQQ---QSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQ 201
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 31.1 bits (67), Expect = 0.18
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +3
Query: 126 GFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQY 305
G + P ++ + A P P Q YP A S+ P Y Q YP A Y
Sbjct: 184 GKEGIFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQY---QQTAYPPQQAPY 240
Query: 306 P-TQGVPYPTHQ 338
P Q P Q
Sbjct: 241 PPVQAYPQAPQQ 252
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Frame = +3
Query: 222 PLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVPYPTH-----QSQGYPQSTAQYPTQGV 386
P P Q+ P G+P+ P S Q + Y +H Q Q QS + G
Sbjct: 218 PFPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSSHPSRMQQMQDIDQSMYKQQRLGS 277
Query: 387 PYPNHQ 404
YP Q
Sbjct: 278 EYPQLQ 283
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.18
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Frame = +3
Query: 132 NNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYPT 311
+ T F+ T + S A P + S + G+ G P S+A P
Sbjct: 649 STFTSSGFNTTSGLPTSSA----STPSSNSSIVPTSTFTSSGF--NTTSGLPTSSASTPL 702
Query: 312 QG---VPYPTHQSQGYPQSTAQYPTQGVPYPNHQSQGYPQS 425
P T S G+ +T+ PT V P S YP S
Sbjct: 703 SNSTVAPTSTFTSSGF-NTTSGLPTSSVSTPLSNSSAYPSS 742
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 188 YEKPSSTRTGLSTTCSICLSSARLSYSAESRLSTKYCSIPDTGCSI 325
Y P +R+GL +C ++ +S A ST + SIP++G ++
Sbjct: 231 YPMPELSRSGLDCIFQLCPNATTISIPANYITSTAFESIPESGHNV 276
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 140 NSSIIQQYNEHARLSSYEKPSSTRTGLSTTCSICLSSARLSYSAESRLSTKYCS 301
+SS+ + + SSY S T +GLS++ SI S+ R S + +ST Y S
Sbjct: 141 SSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVS 194
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 30.3 bits (65), Expect = 0.31
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 195 NPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVPYPTHQS---QGYPQSTA 365
N Q+P P+P Q YP + YP Y G + QG + +
Sbjct: 72 NQQIP---QPVPVQPRYPDEQNFSMNGETYPSEAYDYDYSGQEEAINAMNILQGNLERSN 128
Query: 366 QYPTQGVPYPNHQSQGY 416
+Y ++GVPY Y
Sbjct: 129 EYYSEGVPYSEEDLGAY 145
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 30.3 bits (65), Expect = 0.31
Identities = 26/102 (25%), Positives = 39/102 (38%)
Frame = +3
Query: 144 PQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVP 323
P S S+T+ + ++ + V G + +AY Q YP + T+Q P P
Sbjct: 38 PSSSSSTLPNYAASSLNSRPVSSSG----SGNAYSQAPYPPAR------PTSQRPNSWQP 87
Query: 324 YPTHQSQGYPQSTAQYPTQGVPYPNHQSQGYPQSTAQYPTQG 449
P ++ Y T PY Q PQS+ P G
Sbjct: 88 GNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSYAPPPSG 129
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = +3
Query: 117 PNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQST 296
PN ++L + S++ + G+ + P P + P + QPG P S+
Sbjct: 46 PNYAASSLNSRPVSSSGS--GNAYSQAPYPPAR--PTSQRPNSWQPGNASTMYASPPPSS 101
Query: 297 AQYPTQGVPYPTHQSQGYPQSTAQYPTQGVP 389
Y T PY T Q PQS+ P G P
Sbjct: 102 -NYNTAKPPYQTSQFYARPQSSYAPPPSGRP 131
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.54
Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Frame = +3
Query: 114 PPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYP-IQQNQGYPQ 290
PPN + P S + +N P + P L A P P P ++N+G P
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Query: 291 STAQYPTQGVPYPTHQSQGYPQSTAQYPTQGVPYPNHQSQGYPQSTAQYP 440
+P P + + P QG P ST + P
Sbjct: 327 IGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 28.3 bits (60), Expect = 1.3
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 99 PNQQFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQ 278
PNQ F P+V NN+ S +N + SP + Q PG +P S PI +
Sbjct: 359 PNQSFFPDVSGNNIFDVSRNN--HEVSSPLI---QSPGSYVSMP--SINMVSSLPI--SA 409
Query: 279 GYPQSTAQYPTQGVPYPTHQSQGYPQSTA 365
P S +Q+P + + T+ S+ Q ++
Sbjct: 410 PVPNSNSQFPRRPNTFRTNSSKSVGQGSS 438
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/55 (23%), Positives = 19/55 (34%)
Frame = +3
Query: 144 PQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYP 308
P SN + GS P VPGQ P ++ +P+ + P
Sbjct: 754 PSVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNTSFPVDSKLAFQSLDVSQP 808
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 168 NMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVPYPTHQSQG 347
N+Q +P+ P Q +PLP S Q P Q + S A P + V PT+ SQ
Sbjct: 261 NLQLAPSFAAP----QAHPLP--SHLSQSNVPPQLSHSSVPSPA--PPRSVSQPTYFSQP 312
Query: 348 YPQSTAQY 371
PQ ++ +
Sbjct: 313 MPQFSSSF 320
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +3
Query: 282 YPQSTAQYPTQGVPYPTHQSQ-GYPQ--STAQ 368
YP + + YPTQG Y T + Q YPQ ST+Q
Sbjct: 12 YPTAVS-YPTQGQSYNTQEEQPAYPQRFSTSQ 42
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 183 PAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYP 287
P+ P +PG PLP + P PG P+ G P
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAP-PGVPLPPIPGAP 512
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.9
Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Frame = +3
Query: 99 PNQQFPPNVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQP-GYPIQQN 275
P Q P+ + P + N ++P PG PL S YP G+P +
Sbjct: 165 PTQHHHPHTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRR 224
Query: 276 QG------YPQ-----STAQYPTQGVPYPTHQSQG-YPQSTAQYPTQGVPYPN 398
Q YPQ S Q PT + Q Q Y Q P + PN
Sbjct: 225 QTHFAPYYYPQRATSPSLKQVPTYLGTHVLQQDQSTYDQKVLMPPASYLSSPN 277
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Frame = +3
Query: 177 GSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQ---YPTQGVPYPTHQSQG 347
G+P + P V P P+ P P P S A P+ GVP S
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 348 YPQSTAQYPTQGVPYPNHQSQGYPQSTAQYPT 443
P T VP P ++ P +++ P+
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 507 GFRSQPGSIYGNQGHPPNQFGINQSRXXXXXXKSRPTVFPVNPFNPREDAGVLRKAMKGF 686
G R QPG IY N+ P N + + +S P+ P + G + K M
Sbjct: 847 GCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAP--EPGYIDKVMLTT 904
Query: 687 GTDEKSIIQVLTKRSNEQRL 746
++++I+VL +++ L
Sbjct: 905 TDSDQTLIKVLMRQTRRPEL 924
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +3
Query: 120 NVGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTA 299
N G N +P SFS+ ++ + + V G PL S+ Q + QN+ + ST
Sbjct: 249 NSGLNPRSPNSFSSPLDNPALHTVDSTNVNGSLSPLSNSSSINQ----VHQNETH-GSTI 303
Query: 300 QYPTQGVPY--PTHQSQGYPQSTAQYPTQ 380
P + P+H S P + + P Q
Sbjct: 304 SVPNPNLSQMGPSH-SSSVPSNLSPNPAQ 331
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +1
Query: 241 PILSPVILFSRIKAIHKVLLNTRHRVFHTLLTRVKAIHKVLLNTRHRVFHTLITRVKVIH 420
P + V LF+ +++V+++ + + ++ + A+ K+L + HT T + +
Sbjct: 1665 PAIVRVDLFATAMHVYEVIMDDQQLLKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLF 1724
Query: 421 KALLNI 438
+ LLNI
Sbjct: 1725 EHLLNI 1730
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 222 PLPAQSAYPQPGY---PIQQNQGYPQSTA-QYPTQGVPYPTHQSQGYPQSTAQYPTQGVP 389
PLPA A P P Y P+ Q YP + P+ +H + G+ Q++A P+ +P
Sbjct: 21 PLPATIALPSPNYYYPPVAQGH-YPVNNMWSLPSNVRVISSHGAPGH-QTSASQPSTVMP 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 353 WIALTLVSRVWNTLCRVLSSTLWIALILLNRITGLRIG 240
W+ + +VWNTL + + L + NR TG+ G
Sbjct: 103 WVTEAFIQQVWNTLGKAVKVKL-----IRNRYTGMNAG 135
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.1
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Frame = +3
Query: 168 NMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQSTAQYPTQGVP-----YPT 332
++Q + A P+ G A +A P + N P + YPT +P YP
Sbjct: 546 SLQQTIANSRPE-GNSGSAKKAAAANPMIPSIVLPNSAMPSAMPMYPTPTMPYIPVGYPV 604
Query: 333 HQSQGYPQSTAQYPTQGVPYPNHQSQGYPQSTAQYPTQGF 452
Y ++ +Q+ T P PN ST P G+
Sbjct: 605 PGYTPYMRNPSQH-TSVAPSPNGTPTSGNSSTVGSPMIGY 643
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 155 QQYNEHARLSSYEKPSSTRTGLSTTCSICLSSARLSYSAESRLSTKY 295
Q YN R + +E ++ L ++C SAR S R S Y
Sbjct: 422 QSYNLFHRPTFFESLNNNTVPLVVVYAVCAVSARFSSRMHDRFSPPY 468
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 203 STRTGLSTTCSICLSSARLSYSAESRLSTKYCSIPDTGCSIPYSPESRLSTK--YCSIPD 376
S + L + C + +SS SYS+ +S SI T S + STK CS+P
Sbjct: 67 SKSSNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHLKHSTKAPKCSLPT 126
Query: 377 TGCSI 391
+ I
Sbjct: 127 SALEI 131
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 123 VGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQQNQGYPQST 296
VG +NL + FS TMN S + + + QGY P Q Y + ++G+ T
Sbjct: 139 VGLSNLY-KLFSTTMNRPPSILLVDYSLVSQGYTYPKQVRECLNVYQVLISKGFRNIT 195
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -1
Query: 650 LARIEWVYREDSRSRLRHNRHWSGLVNSELIRWVTLI 540
L++ W+YR R + + S L + ++ WV +
Sbjct: 36 LSQSSWIYRRPRIGRFKSLAYGSALTQTIIVSWVCFL 72
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Frame = +3
Query: 123 VGFNNLTPQSFSNTMNMQGSPAMRNPQVPGQGYPLPAQSAYPQPGYPIQ--QNQGYPQST 296
+ FN+ P F++ N+ + + Q PL + YP+ ++ G +
Sbjct: 1 MNFNSTNPYYFTHEKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNI 60
Query: 297 AQYPTQGVPYPTHQSQGYPQSTAQYPTQGVPYPNHQS 407
A + Y + T P +P P+ QS
Sbjct: 61 ASFQKPSSKATRPYIPSYTRLTYSVPPLPIPPPSEQS 97
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 278 RLSTKYCSIPDTGCSIPYSPESRLSTKYCSIPDTGCSI 391
R T+ S P S+P P S + SIP T S+
Sbjct: 104 RPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSV 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,027
Number of Sequences: 5004
Number of extensions: 69671
Number of successful extensions: 305
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -